Variant report

Variant	rs7528173
Chromosome Location	chr1:150022924-150022925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:41)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:41 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:150022525-150022939	HepG2	liver:	n/a	n/a
2	CTCF	chr1:150022543-150022963	GM12878	blood:	n/a	n/a
3	SMC3	chr1:150022538-150022942	HepG2	liver:	n/a	n/a
4	RAD21	chr1:150022435-150022947	IMR90	lung:	n/a	n/a
5	CTCF	chr1:150022491-150022969	T-47D	breast:	n/a	n/a
6	CEBPB	chr1:150022476-150022953	MCF-7	breast:	n/a	chr1:150022649-150022662 chr1:150022648-150022665 chr1:150022649-150022662
7	CTCF	chr1:150022626-150022966	K562	blood:	n/a	n/a
8	RAD21	chr1:150022355-150022951	HCT-116	colon:	n/a	n/a
9	CTCF	chr1:150022467-150023000	MCF-7	breast:	n/a	n/a
10	FOXA1	chr1:150022591-150022947	HepG2	liver:	n/a	n/a
11	RAD21	chr1:150022406-150022942	GM12878	blood:	n/a	n/a
12	RAD21	chr1:150022557-150022958	A549	lung:	n/a	n/a
13	RAD21	chr1:150022551-150022988	H1-hESC	embryonic stem cell:	n/a	n/a
14	RAD21	chr1:150022496-150022955	Hela-S3	cervix:	n/a	n/a
15	CTCF	chr1:150022528-150022989	HepG2	liver:	n/a	n/a
16	CTCF	chr1:150022526-150022940	K562	blood:	n/a	n/a
17	FOXA2	chr1:150022653-150022998	A549	lung:	n/a	n/a
18	CTCF	chr1:150022369-150023106	SK-N-SH	brain:	n/a	n/a
19	RAD21	chr1:150022585-150022924	A549	lung:	n/a	n/a
20	RAD21	chr1:150022364-150022974	MCF-7	breast:	n/a	n/a
21	CTCF	chr1:150022506-150022964	HCT-116	colon:	n/a	n/a
22	CTCF	chr1:150022554-150022948	K562	blood:	n/a	n/a
23	RAD21	chr1:150022542-150022935	H1-hESC	embryonic stem cell:	n/a	n/a
24	RAD21	chr1:150022333-150023089	SK-N-SH	brain:	n/a	n/a
25	SMC3	chr1:150022532-150022970	GM12878	blood:	n/a	n/a
26	RAD21	chr1:150022506-150022959	HCT-116	colon:	n/a	n/a
27	CTCF	chr1:150022244-150023108	A549	lung:	n/a	n/a
28	CTCF	chr1:150022537-150022984	MCF-7	breast:	n/a	n/a
29	CTCF	chr1:150022553-150022948	IMR90	lung:	n/a	n/a
30	RAD21	chr1:150022376-150022980	HepG2	liver:	n/a	n/a
31	RAD21	chr1:150022536-150022939	SK-N-SH_RA	brain:	n/a	n/a
32	RAD21	chr1:150022583-150022931	HepG2	liver:	n/a	n/a
33	RAD21	chr1:150022390-150023001	MCF-7	breast:	n/a	n/a
34	SMC3	chr1:150022329-150023107	SK-N-SH	brain:	n/a	n/a
35	CTCF	chr1:150022411-150022960	HCT-116	colon:	n/a	n/a
36	RAD21	chr1:150022526-150022924	H1-hESC	embryonic stem cell:	n/a	n/a
37	FOXA1	chr1:150022614-150022925	HepG2	liver:	n/a	n/a
38	RAD21	chr1:150022552-150022982	SK-N-SH_RA	brain:	n/a	n/a
39	SMC3	chr1:150022444-150022943	Hela-S3	cervix:	n/a	n/a
40	RAD21	chr1:150022426-150022988	A549	lung:	n/a	n/a
41	RAD21	chr1:150022568-150022943	K562	blood:	n/a	n/a

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149875657..149877242-chr1:150022210..150023854,2	K562	blood:
2	chr1:150019180..150020773-chr1:150021063..150023287,2	MCF-7	breast:
3	chr1:150017927..150020825-chr1:150022056..150024781,3	MCF-7	breast:
4	chr1:149858084..149861835-chr1:150019287..150023815,6	K562	blood:
5	chr1:149933269..149934631-chr1:150022302..150023872,9	MCF-7	breast:
6	chr1:149933676..149934376-chr1:150022343..150023190,2	K562	blood:
7	chr1:149856755..149861735-chr1:150014773..150024288,21	MCF-7	breast:
8	chr1:150020211..150024864-chr1:150037839..150041365,4	MCF-7	breast:
9	chr1:150020045..150025053-chr1:150028781..150033753,5	MCF-7	breast:
10	chr1:149911189..149913982-chr1:150022742..150024271,2	MCF-7	breast:
11	chr1:149932228..149936162-chr1:150020648..150023324,4	MCF-7	breast:
12	chr1:149933674..149935222-chr1:150022197..150023225,15	MCF-7	breast:
13	chr1:149949620..149952507-chr1:150022418..150024343,2	MCF-7	breast:
14	chr1:149858368..149864477-chr1:150018495..150024155,9	K562	blood:
15	chr1:149907286..149909583-chr1:150020946..150022948,2	K562	blood:
16	chr1:149938841..149939614-chr1:150022722..150023249,3	MCF-7	breast:
17	chr1:149855348..149862315-chr1:150015478..150024375,18	MCF-7	breast:
18	chr1:150022553..150024320-chr1:150157694..150159816,2	K562	blood:
19	chr1:149993776..149995889-chr1:150021300..150024191,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223945	TF binding region
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000014914	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11205315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11205335	1.00[AMR][1000 genomes]
rs11205336	1.00[AMR][1000 genomes]
rs12058370	1.00[AFR][1000 genomes]
rs12058676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060128	1.00[AMR][1000 genomes]
rs12079624	1.00[AMR][1000 genomes]
rs12085962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859152	1.00[AMR][1000 genomes]
rs58826204	1.00[AMR][1000 genomes]
rs6698713	1.00[AMR][1000 genomes]
rs6698937	1.00[AMR][1000 genomes]
rs7535225	1.00[AMR][1000 genomes]
rs9887822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150016800-150024000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:150017600-150026200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:150017800-150025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:150017800-150026000	Weak transcription	Osteobl	bone
7	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
9	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:150018400-150024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:150019400-150023200	Weak transcription	A549	lung
12	chr1:150021800-150023000	Enhancers	HepG2	liver
13	chr1:150022000-150023000	Enhancers	Liver	Liver
14	chr1:150022000-150023200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:150022200-150025800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:150022400-150023000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:150022400-150023000	Enhancers	Brain Anterior Caudate	brain
18	chr1:150022400-150023000	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:150022600-150023000	Enhancers	Primary B cells from cord blood	blood
20	chr1:150022600-150023000	Enhancers	Adipose Nuclei	Adipose
21	chr1:150022600-150023400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr1:150022800-150023000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:150022800-150023000	Enhancers	Colon Smooth Muscle	Colon
24	chr1:150022800-150023400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr1:150022800-150023400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr1:150022800-150025800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:150022800-150025800	Weak transcription	GM12878-XiMat	blood
28	chr1:150022800-150032400	Weak transcription	Fetal Intestine Small	intestine
29	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links