Variant report

Variant	rs11205336
Chromosome Location	chr1:150156693-150156694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150135480..150137843-chr1:150155550..150159423,3	MCF-7	breast:
2	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
3	chr1:150141416..150143115-chr1:150156273..150159432,3	K562	blood:
4	chr1:150148382..150150067-chr1:150155558..150157916,2	K562	blood:
5	chr1:150155365..150157999-chr1:150205439..150207085,2	K562	blood:
6	chr1:149855497..149863444-chr1:150156597..150162643,11	K562	blood:
7	chr1:149858148..149861244-chr1:150153883..150158292,4	MCF-7	breast:
8	chr1:150154097..150157004-chr1:150160864..150163104,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11205315	1.00[AMR][1000 genomes]
rs11205335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058676	1.00[AMR][1000 genomes]
rs12059991	1.00[AMR][1000 genomes]
rs12060128	1.00[AMR][1000 genomes]
rs12079624	1.00[AMR][1000 genomes]
rs12085962	1.00[AMR][1000 genomes]
rs57859152	1.00[AMR][1000 genomes]
rs58826204	1.00[AMR][1000 genomes]
rs6698713	1.00[AMR][1000 genomes]
rs6698937	1.00[AMR][1000 genomes]
rs7528173	1.00[AMR][1000 genomes]
rs7535225	1.00[AMR][1000 genomes]
rs9887822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
2	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
4	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
5	chr1:150147200-150159000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:150151000-150159200	Weak transcription	Adipose Nuclei	Adipose
7	chr1:150153000-150158400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:150153200-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150153400-150158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:150153400-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:150154200-150159000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:150154400-150157200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:150154400-150158800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:150154800-150156800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr1:150154800-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:150155000-150158800	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:150155800-150157000	Enhancers	Placenta	Placenta
18	chr1:150155800-150157400	Enhancers	HepG2	liver
19	chr1:150156000-150156800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:150156000-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:150156200-150156800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr1:150156200-150156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:150156400-150156800	Enhancers	HMEC	breast
24	chr1:150156400-150159200	Weak transcription	Brain Substantia Nigra	brain
25	chr1:150156600-150158400	Weak transcription	Primary B cells from cord blood	blood
26	chr1:150156600-150158600	Weak transcription	NHEK	skin
27	chr1:150156600-150159200	Weak transcription	Brain Anterior Caudate	brain
28	chr1:150156600-150159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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