Variant report

Variant	rs58826204
Chromosome Location	chr1:150136241-150136242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149910983..149913297-chr1:150134824..150136527,2	K562	blood:
2	chr1:149854392..149861957-chr1:150131544..150142194,21	K562	blood:
3	chr1:149932118..149934752-chr1:150134804..150137621,2	K562	blood:
4	chr1:150135482..150138288-chr1:150152643..150155510,2	MCF-7	breast:
5	chr1:149852970..149861957-chr1:150133189..150142962,24	K562	blood:
6	chr1:150134477..150137010-chr1:150153279..150155439,2	K562	blood:
7	chr1:150135426..150138893-chr1:150159177..150161472,3	K562	blood:
8	chr1:150133635..150136793-chr1:150204165..150209433,5	K562	blood:
9	chr1:150055524..150057125-chr1:150135664..150138372,2	MCF-7	breast:
10	chr1:149906675..149908873-chr1:150134485..150137419,3	MCF-7	breast:
11	chr1:150134055..150139099-chr1:150139132..150143915,8	K562	blood:
12	chr1:150037224..150041771-chr1:150132970..150138750,9	MCF-7	breast:
13	chr1:150035483..150047454-chr1:150129931..150138567,28	MCF-7	breast:
14	chr1:149814399..149818265-chr1:150133818..150137091,5	MCF-7	breast:
15	chr1:150046641..150049540-chr1:150134535..150136956,3	K562	blood:
16	chr1:149981108..149982991-chr1:150135375..150137210,2	MCF-7	breast:
17	chr1:149854077..149861961-chr1:150131511..150145996,30	MCF-7	breast:
18	chr1:149856989..149863100-chr1:150133834..150145484,23	MCF-7	breast:
19	chr1:150038493..150040770-chr1:150134879..150136802,2	K562	blood:
20	chr1:150133612..150139451-chr1:150205752..150208601,7	K562	blood:
21	chr1:150040336..150043313-chr1:150134934..150137492,3	K562	blood:
22	chr1:150011142..150013878-chr1:150135027..150136681,2	MCF-7	breast:
23	chr1:150135480..150137843-chr1:150155550..150159423,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000220323	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000272993	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000183558	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000163113	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11205315	1.00[AMR][1000 genomes]
rs11205335	1.00[AMR][1000 genomes]
rs11205336	1.00[AMR][1000 genomes]
rs12058676	1.00[AMR][1000 genomes]
rs12059991	1.00[AMR][1000 genomes]
rs12060128	1.00[AMR][1000 genomes]
rs12079624	1.00[AMR][1000 genomes]
rs12085962	1.00[AMR][1000 genomes]
rs57859152	1.00[AMR][1000 genomes]
rs6698713	1.00[AMR][1000 genomes]
rs6698937	1.00[AMR][1000 genomes]
rs7528173	1.00[AMR][1000 genomes]
rs7535225	1.00[AMR][1000 genomes]
rs9887822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535152	chr1:150120726-150143089	Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150131800-150138600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr1:150132200-150136400	Enhancers	Placenta	Placenta
3	chr1:150132200-150136800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:150132400-150138200	Weak transcription	Gastric	stomach
5	chr1:150132400-150141200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:150132800-150136400	Enhancers	Spleen	Spleen
7	chr1:150132800-150138400	Enhancers	Fetal Heart	heart
8	chr1:150133000-150137400	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr1:150133600-150138600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:150133800-150136600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:150134000-150136400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:150134400-150136400	Enhancers	Left Ventricle	heart
13	chr1:150134600-150138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:150134800-150136600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:150135200-150145200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:150135400-150136400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:150135400-150136400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:150135400-150136600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:150135400-150136600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:150135400-150136600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:150135400-150136600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:150135400-150136600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:150135400-150136600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:150135400-150136600	Enhancers	Fetal Stomach	stomach
25	chr1:150135400-150136600	Enhancers	Ovary	ovary
26	chr1:150135400-150136600	Enhancers	Right Ventricle	heart
27	chr1:150135400-150136800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:150135400-150136800	Enhancers	Right Atrium	heart
29	chr1:150135400-150137400	Enhancers	NHLF	lung
30	chr1:150135400-150138400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:150135400-150138400	Enhancers	Colon Smooth Muscle	Colon
32	chr1:150135400-150138600	Enhancers	Fetal Thymus	thymus
33	chr1:150135400-150141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:150135600-150136600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:150135600-150136800	Flanking Active TSS	GM12878-XiMat	blood
36	chr1:150135600-150138200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr1:150135600-150138200	Enhancers	Fetal Muscle Leg	muscle
38	chr1:150135600-150138600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:150135800-150136400	Enhancers	H9 Cell Line	embryonic stem cell
40	chr1:150135800-150136400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr1:150135800-150136400	Enhancers	NH-A	brain
42	chr1:150135800-150136600	Enhancers	Fetal Intestine Small	intestine
43	chr1:150135800-150136600	Enhancers	Fetal Lung	lung
44	chr1:150135800-150136800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr1:150135800-150136800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr1:150135800-150137600	Enhancers	Brain Germinal Matrix	brain
47	chr1:150135800-150138400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:150135800-150138400	Enhancers	Stomach Mucosa	stomach
49	chr1:150135800-150138600	Enhancers	Primary hematopoietic stem cells	blood
50	chr1:150135800-150138600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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