Variant report

Variant	rs11210098
Chromosome Location	chr1:73427085-73427086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10789352	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11210132	1.00[ASN][1000 genomes]
rs3122928	1.00[ASN][1000 genomes]
rs4233095	1.00[ASN][1000 genomes]
rs4233102	1.00[ASN][1000 genomes]
rs4233104	1.00[ASN][1000 genomes]
rs4523477	1.00[ASN][1000 genomes]
rs4559447	1.00[ASN][1000 genomes]
rs4562574	1.00[ASN][1000 genomes]
rs4609383	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4649971	1.00[ASN][1000 genomes]
rs4650168	0.93[AFR][1000 genomes]
rs4650169	0.80[AMR][1000 genomes]
rs4650171	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6658087	1.00[ASN][1000 genomes]
rs7339900	1.00[ASN][1000 genomes]
rs7340009	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73425000-73443000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:73426600-73432600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:73426600-73433800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:73426600-73443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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