Variant report

Variant	rs4609383
Chromosome Location	chr1:73477420-73477421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:73472905..73475418-chr1:73476553..73478531,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10789352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789356	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789357	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210098	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11210132	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210169	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210171	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210173	1.00[ASN][1000 genomes]
rs12080071	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122928	1.00[ASN][1000 genomes]
rs4233095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233102	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233104	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4262483	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345765	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384175	1.00[ASN][1000 genomes]
rs4512592	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523477	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4649971	1.00[ASN][1000 genomes]
rs4650168	0.89[AFR][1000 genomes]
rs4650169	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4650171	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650198	1.00[ASN][1000 genomes]
rs6658087	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660204	1.00[ASN][1000 genomes]
rs6683662	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686352	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701194	1.00[ASN][1000 genomes]
rs6703944	1.00[ASN][1000 genomes]
rs7339900	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340009	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449376	chr1:73477164-73481862	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73476000-73478000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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