Variant report

Variant	rs11210169
Chromosome Location	chr1:73637421-73637422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10789352	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789356	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789357	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210173	1.00[ASN][1000 genomes]
rs12080071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233095	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4262483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342806	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345765	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384175	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512592	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523477	1.00[ASN][1000 genomes]
rs4559447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562574	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609383	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650171	1.00[ASN][1000 genomes]
rs4650198	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658087	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660204	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683662	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686352	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701194	1.00[ASN][1000 genomes]
rs6703944	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339900	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340009	1.00[ASN][1000 genomes]
rs7514774	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2757736	chr1:73613099-73775684	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758942	chr1:73613099-73775684	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv546569	chr1:73634013-73647909	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv870886	chr1:73634013-73790683	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73628400-73641800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:73636200-73642200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:73636600-73641600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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