Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10789352	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789356	1.00[ASN][1000 genomes]
rs10789357	1.00[ASN][1000 genomes]
rs11210098	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11210132	1.00[ASN][1000 genomes]
rs11210169	1.00[ASN][1000 genomes]
rs11210171	1.00[ASN][1000 genomes]
rs11210173	1.00[ASN][1000 genomes]
rs12080071	1.00[ASN][1000 genomes]
rs3122928	1.00[ASN][1000 genomes]
rs4233095	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233102	1.00[ASN][1000 genomes]
rs4233104	1.00[ASN][1000 genomes]
rs4262483	1.00[ASN][1000 genomes]
rs4342806	1.00[ASN][1000 genomes]
rs4345765	1.00[ASN][1000 genomes]
rs4384175	1.00[ASN][1000 genomes]
rs4512592	1.00[ASN][1000 genomes]
rs4523477	1.00[ASN][1000 genomes]
rs4559447	1.00[ASN][1000 genomes]
rs4562574	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609383	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4649971	1.00[ASN][1000 genomes]
rs4650168	0.83[AFR][1000 genomes]
rs4650198	1.00[ASN][1000 genomes]
rs6658087	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660204	1.00[ASN][1000 genomes]
rs6683662	1.00[ASN][1000 genomes]
rs6686352	1.00[ASN][1000 genomes]
rs6701194	1.00[ASN][1000 genomes]
rs6703944	1.00[ASN][1000 genomes]
rs7339900	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340009	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73455200-73456800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:73456200-73460400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr1:73456600-73456800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:73456600-73457000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

Quick Search: