Variant report
| Variant | rs7340009 |
|---|---|
| Chromosome Location | chr1:73478869-73478870 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10789352 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10789356 | 1.00[ASN][1000 genomes] |
| rs10789357 | 1.00[ASN][1000 genomes] |
| rs11210098 | 1.00[ASN][1000 genomes] |
| rs11210132 | 1.00[ASN][1000 genomes] |
| rs11210169 | 1.00[ASN][1000 genomes] |
| rs11210171 | 1.00[ASN][1000 genomes] |
| rs11210173 | 1.00[ASN][1000 genomes] |
| rs12080071 | 1.00[ASN][1000 genomes] |
| rs3122928 | 1.00[ASN][1000 genomes] |
| rs4233095 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4233102 | 1.00[ASN][1000 genomes] |
| rs4233104 | 1.00[ASN][1000 genomes] |
| rs4262483 | 1.00[ASN][1000 genomes] |
| rs4342806 | 1.00[ASN][1000 genomes] |
| rs4345765 | 1.00[ASN][1000 genomes] |
| rs4384175 | 1.00[ASN][1000 genomes] |
| rs4512592 | 1.00[ASN][1000 genomes] |
| rs4523477 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4559447 | 1.00[ASN][1000 genomes] |
| rs4562574 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4609383 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4649971 | 1.00[ASN][1000 genomes] |
| rs4650169 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4650171 | 1.00[ASN][1000 genomes] |
| rs4650198 | 1.00[ASN][1000 genomes] |
| rs6658087 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6660204 | 1.00[ASN][1000 genomes] |
| rs6683662 | 1.00[ASN][1000 genomes] |
| rs6686352 | 1.00[ASN][1000 genomes] |
| rs6701194 | 1.00[ASN][1000 genomes] |
| rs6703944 | 1.00[ASN][1000 genomes] |
| rs7339900 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012319 | chr1:73337418-73547086 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3449376 | chr1:73477164-73481862 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:73478200-73479200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
