Variant report

Variant	rs4233095
Chromosome Location	chr1:73451819-73451820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10789352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789356	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789357	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210098	1.00[ASN][1000 genomes]
rs11210132	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210169	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210171	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210173	1.00[ASN][1000 genomes]
rs12080071	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122928	1.00[ASN][1000 genomes]
rs4233102	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233104	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4262483	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345765	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384175	1.00[ASN][1000 genomes]
rs4512592	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523477	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4649971	1.00[ASN][1000 genomes]
rs4650169	0.83[EUR][1000 genomes]
rs4650171	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650198	1.00[ASN][1000 genomes]
rs6658087	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660204	1.00[ASN][1000 genomes]
rs6683662	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686352	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701194	1.00[ASN][1000 genomes]
rs6703944	1.00[ASN][1000 genomes]
rs7339900	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340009	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425113	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73450000-73452600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:73451000-73453600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:73451200-73452000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr1:73451200-73452200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:73451200-73453200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:73451200-73453400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:73451200-73453600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr1:73451800-73452200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:73451800-73453400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:73451800-73453400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:73451800-73453800	Enhancers	HUES48 Cell Line	embryonic stem cell

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