Variant report

Variant	rs11212534
Chromosome Location	chr11:108027561-108027562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108027496..108029071-chr11:108067819..108069452,2	K562	blood:
2	chr11:108027417..108028946-chr11:108029705..108032470,2	K562	blood:
3	chr11:108022463..108026326-chr11:108027495..108029959,5	K562	blood:
4	chr11:108026155..108028288-chr11:108047248..108050243,2	K562	blood:
5	chr11:108027024..108030077-chr11:108031308..108035718,4	K562	blood:
6	chr11:108026423..108028907-chr11:108032793..108035106,2	K562	blood:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11212489	1.00[AMR][1000 genomes]
rs11212497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212517	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212521	0.83[ASN][1000 genomes]
rs11212522	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212548	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212567	1.00[AMR][1000 genomes]
rs11212571	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212574	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212576	1.00[AMR][1000 genomes]
rs11212582	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212590	1.00[CHB][hapmap]
rs11518204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12365364	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12365932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234993	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3092910	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3218688	1.00[GIH][hapmap]
rs36076410	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4987901	1.00[AFR][1000 genomes]
rs4987911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987947	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988005	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988007	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988033	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988047	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988063	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58807621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913704	1.00[EUR][1000 genomes]
rs659243	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108030000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:107994000-108029600	Weak transcription	Fetal Brain Male	brain
4	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:108002400-108040200	Strong transcription	Liver	Liver
6	chr11:108002800-108048000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:108003600-108040800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:108004200-108035000	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr11:108004400-108037600	Strong transcription	Adipose Nuclei	Adipose
10	chr11:108005800-108040800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr11:108007400-108033600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:108007800-108032000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:108008600-108031200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:108009000-108041000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:108009200-108033400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:108009400-108028000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:108009400-108031200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr11:108009400-108040400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:108009400-108062600	Strong transcription	Primary T cells from cord blood	blood
21	chr11:108009400-108068400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:108009600-108041800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr11:108009600-108049000	Strong transcription	Placenta	Placenta
24	chr11:108009600-108068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:108009800-108048000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:108010800-108038800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:108010800-108041400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:108010800-108041800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:108010800-108049200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:108011000-108038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:108011600-108044200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:108011800-108047800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:108015200-108031400	Weak transcription	HSMMtube	muscle
35	chr11:108015400-108031800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:108015600-108031400	Weak transcription	Gastric	stomach
37	chr11:108015600-108045000	Weak transcription	Stomach Mucosa	stomach
38	chr11:108015800-108030800	Weak transcription	Small Intestine	intestine
39	chr11:108015800-108038000	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:108016000-108033000	Strong transcription	HSMM	muscle
41	chr11:108016200-108039800	Weak transcription	Fetal Heart	heart
42	chr11:108016600-108035400	Strong transcription	Fetal Lung	lung
43	chr11:108017000-108075000	Strong transcription	Dnd41	blood
44	chr11:108017800-108030800	Weak transcription	Psoas Muscle	Psoas
45	chr11:108018200-108030200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:108018200-108040600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:108019000-108029200	Weak transcription	A549	lung
48	chr11:108019000-108040000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:108019000-108043800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:108021000-108039400	Weak transcription	Brain Angular Gyrus	brain

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