Variant report

Variant	rs11212563
Chromosome Location	chr11:108108856-108108857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108092532..108097509-chr11:108106620..108109590,6	K562	blood:

Variant related genes	Relation type
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11212489	1.00[AMR][1000 genomes]
rs11212497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212517	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212521	0.83[ASN][1000 genomes]
rs11212522	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212567	1.00[AMR][1000 genomes]
rs11212571	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212574	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212576	1.00[AMR][1000 genomes]
rs11212582	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11518204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12365364	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12365932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234993	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3092910	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36076410	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4987901	1.00[AFR][1000 genomes]
rs4987911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987947	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988005	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988007	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988033	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988047	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4988063	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58807621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913704	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv556431	chr11:108098142-108115587	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv556432	chr11:108098563-108115539	Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
4	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
6	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
10	chr11:108096400-108156400	Weak transcription	NHLF	lung
11	chr11:108096600-108121400	Weak transcription	Spleen	Spleen
12	chr11:108096600-108128400	Weak transcription	Pancreas	Pancrea
13	chr11:108097000-108129200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:108097800-108112000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:108098200-108112400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:108098400-108122400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:108098400-108131600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:108099800-108119600	Weak transcription	NHDF-Ad	bronchial
19	chr11:108099800-108139000	Weak transcription	Hela-S3	cervix
20	chr11:108100600-108119200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:108100600-108128200	Weak transcription	K562	blood
22	chr11:108100800-108113400	Weak transcription	Aorta	Aorta
23	chr11:108101000-108110600	Weak transcription	Small Intestine	intestine
24	chr11:108101200-108128200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:108101600-108130800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:108101800-108116200	Weak transcription	Ovary	ovary
27	chr11:108101800-108121400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:108102200-108121400	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:108104000-108109600	Weak transcription	HSMMtube	muscle
30	chr11:108104200-108111000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:108104200-108130000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:108104200-108147400	Weak transcription	Gastric	stomach
33	chr11:108104400-108110000	Weak transcription	Osteobl	bone
34	chr11:108104400-108110800	Weak transcription	Placenta	Placenta
35	chr11:108104400-108113600	Weak transcription	Fetal Intestine Small	intestine
36	chr11:108104600-108121400	Weak transcription	Right Ventricle	heart
37	chr11:108104600-108144000	Weak transcription	Lung	lung
38	chr11:108105400-108111400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:108105600-108130400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:108106400-108109600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:108106600-108109000	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr11:108106600-108110200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:108107000-108112000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:108107200-108109600	Enhancers	Primary B cells from peripheral blood	blood
45	chr11:108107200-108113000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:108107200-108120000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:108107200-108124800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:108107600-108109600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:108107600-108110000	Weak transcription	HepG2	liver
50	chr11:108107600-108110800	Weak transcription	Brain Inferior Temporal Lobe	brain

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