Variant report

Variant	rs11518204
Chromosome Location	chr11:108079613-108079614
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108078114..108080431-chr11:108091811..108093952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11212489	1.00[AMR][1000 genomes]
rs11212497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212517	0.86[EUR][1000 genomes]
rs11212522	1.00[EUR][1000 genomes]
rs11212533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212536	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212567	1.00[AMR][1000 genomes]
rs11212571	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212574	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212576	1.00[AMR][1000 genomes]
rs11212582	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12365364	1.00[EUR][1000 genomes]
rs12365932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1800066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2234993	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3092910	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs36076410	1.00[EUR][1000 genomes]
rs4987911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987947	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988005	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988007	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988033	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988047	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988063	1.00[AMR][1000 genomes]
rs58807621	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61913704	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
4	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108072800-108081800	ZNF genes & repeats	GM12878-XiMat	blood
6	chr11:108073400-108080200	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr11:108074000-108082600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr11:108074000-108083000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr11:108074200-108081000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:108074200-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:108074400-108082400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:108074400-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
14	chr11:108074600-108080000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:108074600-108082800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr11:108074600-108084000	ZNF genes & repeats	Fetal Stomach	stomach
17	chr11:108074600-108084800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:108074800-108079800	ZNF genes & repeats	Fetal Thymus	thymus
19	chr11:108074800-108080800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:108074800-108082400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:108074800-108082600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr11:108075000-108081800	ZNF genes & repeats	Dnd41	blood
23	chr11:108075000-108083600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:108075400-108082600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr11:108075800-108082400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:108076800-108080000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:108076800-108081400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:108077000-108081800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr11:108077600-108084000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:108077800-108089200	Weak transcription	HMEC	breast
31	chr11:108078000-108085200	Strong transcription	Fetal Lung	lung
32	chr11:108078000-108090400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:108078000-108090600	Weak transcription	Fetal Heart	heart
34	chr11:108078200-108081000	Weak transcription	HSMM	muscle
35	chr11:108078200-108082800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:108078200-108084000	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr11:108078200-108084200	Strong transcription	Primary T cells from cord blood	blood
38	chr11:108078200-108089000	Weak transcription	Osteobl	bone
39	chr11:108078200-108089400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:108078200-108089400	Weak transcription	NHDF-Ad	bronchial
41	chr11:108078400-108080800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:108078400-108081600	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:108078400-108082200	Strong transcription	Ovary	ovary
44	chr11:108078400-108083600	Weak transcription	HUVEC	blood vessel
45	chr11:108078400-108085000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:108078400-108091800	Weak transcription	HSMMtube	muscle
47	chr11:108078600-108081000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:108078600-108081000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:108078600-108081000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:108078600-108081400	Strong transcription	Rectal Mucosa Donor 29	rectum

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