Variant report

Variant	rs4988007
Chromosome Location	chr11:108163067-108163068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11212517	0.83[ASN][1000 genomes]
rs11212521	0.83[ASN][1000 genomes]
rs11212522	0.83[ASN][1000 genomes]
rs11212533	1.00[AMR][1000 genomes]
rs11212534	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212536	1.00[ASN][1000 genomes]
rs11212547	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212548	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212562	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212563	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212565	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11212567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212590	1.00[EUR][1000 genomes]
rs11212595	1.00[EUR][1000 genomes]
rs11212596	1.00[EUR][1000 genomes]
rs11212603	1.00[EUR][1000 genomes]
rs11212639	1.00[EUR][1000 genomes]
rs11212651	1.00[EUR][1000 genomes]
rs11212652	1.00[EUR][1000 genomes]
rs11212668	1.00[EUR][1000 genomes]
rs11212670	1.00[EUR][1000 genomes]
rs11212675	1.00[EUR][1000 genomes]
rs11512449	1.00[EUR][1000 genomes]
rs11518204	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12360724	1.00[EUR][1000 genomes]
rs12365364	0.83[ASN][1000 genomes]
rs12365932	1.00[ASN][1000 genomes]
rs1800066	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2234993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235005	1.00[AFR][1000 genomes]
rs3092910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3218711	1.00[EUR][1000 genomes]
rs36076410	0.83[ASN][1000 genomes]
rs4987911	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4987947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4988005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4988033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4988047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4988063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58807621	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv1821877	chr11:108158134-108219339	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108108400-108184800	Weak transcription	NHEK	skin
3	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:108138400-108209400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:108139200-108163400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:108139200-108208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:108141200-108181800	Weak transcription	Small Intestine	intestine
9	chr11:108141800-108163600	Strong transcription	Adipose Nuclei	Adipose
10	chr11:108143000-108175800	Weak transcription	Right Ventricle	heart
11	chr11:108143000-108186600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:108143800-108175400	Weak transcription	Fetal Brain Male	brain
13	chr11:108144000-108168200	Weak transcription	Hela-S3	cervix
14	chr11:108144400-108165400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:108144400-108200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:108145800-108174400	Weak transcription	A549	lung
17	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:108147200-108210800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:108148200-108225600	Weak transcription	Esophagus	oesophagus
20	chr11:108148600-108166200	Weak transcription	Lung	lung
21	chr11:108148600-108202600	Weak transcription	Psoas Muscle	Psoas
22	chr11:108148600-108208800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:108148600-108225600	Weak transcription	Gastric	stomach
24	chr11:108149200-108208600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:108149400-108211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:108149600-108181800	Weak transcription	Aorta	Aorta
27	chr11:108149600-108209000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:108149600-108209600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:108150200-108208800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:108151000-108176400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:108151200-108164600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:108151400-108164600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:108151400-108172000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:108151400-108210000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:108151600-108169200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:108151600-108188600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:108152200-108163800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:108152400-108163200	Strong transcription	Osteobl	bone
39	chr11:108152400-108171800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:108153000-108163400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:108153200-108181600	Weak transcription	Pancreas	Pancrea
42	chr11:108154000-108181800	Weak transcription	Thymus	Thymus
43	chr11:108154000-108193600	Weak transcription	Colonic Mucosa	Colon
44	chr11:108154600-108186600	Weak transcription	K562	blood
45	chr11:108155800-108167200	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:108155800-108168200	Weak transcription	Fetal Kidney	kidney
47	chr11:108155800-108173600	Weak transcription	Brain Angular Gyrus	brain
48	chr11:108156000-108174000	Weak transcription	HUVEC	blood vessel
49	chr11:108156000-108175400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:108156200-108163800	Strong transcription	Rectal Mucosa Donor 29	rectum

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