Variant report

Variant	rs11212548
Chromosome Location	chr11:108071582-108071583
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108069760..108073247-chr11:108087565..108091000,4	K562	blood:
2	chr11:108071455..108073247-chr11:108087977..108089768,2	K562	blood:
3	chr11:108070782..108073415-chr11:108095744..108098057,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11212489	1.00[AMR][1000 genomes]
rs11212497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212517	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11212522	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11212533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212534	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212536	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212567	1.00[AMR][1000 genomes]
rs11212571	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212574	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212576	1.00[AMR][1000 genomes]
rs11212582	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212590	1.00[CHB][hapmap]
rs11212595	1.00[CHB][hapmap]
rs11518204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365364	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12365932	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1800066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2234993	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3092910	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3218688	1.00[GIH][hapmap]
rs36076410	1.00[EUR][1000 genomes]
rs4987901	1.00[AFR][1000 genomes]
rs4987911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987947	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988005	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988007	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988033	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988047	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4988063	1.00[AMR][1000 genomes]
rs58807621	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61913704	1.00[EUR][1000 genomes]
rs659243	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108017000-108075000	Strong transcription	Dnd41	blood
2	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
3	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
5	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
6	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
8	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
9	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:108060000-108077000	Weak transcription	NHLF	lung
11	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
12	chr11:108061800-108075000	Weak transcription	Ovary	ovary
13	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:108063400-108077200	Weak transcription	NHDF-Ad	bronchial
15	chr11:108065200-108074400	Weak transcription	Fetal Kidney	kidney
16	chr11:108065400-108075400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:108067200-108073200	Weak transcription	HUVEC	blood vessel
18	chr11:108067200-108073600	Weak transcription	Fetal Lung	lung
19	chr11:108067200-108076800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:108067400-108076400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:108067400-108077000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:108067600-108073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:108067600-108073400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:108067600-108076800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:108067800-108074400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:108067800-108074600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:108068000-108074200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr11:108068000-108074800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
29	chr11:108068000-108075000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:108068200-108074000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:108068400-108073200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr11:108068800-108074600	Weak transcription	HepG2	liver
33	chr11:108068800-108074800	Weak transcription	Liver	Liver
34	chr11:108069000-108074800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr11:108069000-108074800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:108069200-108072000	Strong transcription	Fetal Brain Female	brain
37	chr11:108069200-108075400	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr11:108069400-108071800	Strong transcription	Thymus	Thymus
39	chr11:108069400-108071800	Enhancers	NHEK	skin
40	chr11:108069400-108073800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:108069600-108071600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:108069600-108072600	Enhancers	Stomach Mucosa	stomach
43	chr11:108069600-108072800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:108069600-108072800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:108069600-108072800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:108069800-108072400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr11:108070000-108071600	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:108070000-108074000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:108070000-108075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:108070200-108071600	Genic enhancers	Primary B cells from cord blood	blood

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