Variant report
| Variant | rs11212629 |
|---|---|
| Chromosome Location | chr11:108302404-108302405 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:108301955..108303880-chr11:108367660..108369916,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000178202 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11821287 | 1.00[AMR][1000 genomes] |
| rs11824991 | 1.00[AMR][1000 genomes] |
| rs2227924 | 1.00[AMR][1000 genomes] |
| rs2229019 | 1.00[AMR][1000 genomes] |
| rs3212321 | 1.00[AMR][1000 genomes] |
| rs3218673 | 1.00[AMR][1000 genomes] |
| rs3218677 | 1.00[AMR][1000 genomes] |
| rs3218687 | 1.00[AMR][1000 genomes] |
| rs3218710 | 1.00[AMR][1000 genomes] |
| rs4987897 | 1.00[AMR][1000 genomes] |
| rs4987912 | 1.00[AMR][1000 genomes] |
| rs4987930 | 1.00[AMR][1000 genomes] |
| rs4987932 | 1.00[AMR][1000 genomes] |
| rs4987940 | 1.00[AMR][1000 genomes] |
| rs4987942 | 1.00[AMR][1000 genomes] |
| rs4987953 | 1.00[AMR][1000 genomes] |
| rs4987963 | 1.00[AMR][1000 genomes] |
| rs4988024 | 1.00[AMR][1000 genomes] |
| rs4988032 | 1.00[AMR][1000 genomes] |
| rs4988035 | 1.00[AMR][1000 genomes] |
| rs4988040 | 1.00[AMR][1000 genomes] |
| rs4988043 | 1.00[AMR][1000 genomes] |
| rs4988051 | 1.00[AMR][1000 genomes] |
| rs4988059 | 1.00[AMR][1000 genomes] |
| rs4988068 | 1.00[AMR][1000 genomes] |
| rs4988077 | 1.00[AMR][1000 genomes] |
| rs4988121 | 1.00[AMR][1000 genomes] |
| rs4988132 | 1.00[AMR][1000 genomes] |
| rs55760417 | 1.00[AMR][1000 genomes] |
| rs55973324 | 1.00[AMR][1000 genomes] |
| rs55982799 | 1.00[AMR][1000 genomes] |
| rs57627058 | 1.00[AMR][1000 genomes] |
| rs61504979 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052254 | chr11:108122683-108845008 | Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv541164 | chr11:108122683-108845008 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv832262 | chr11:108123831-108309350 | Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv832263 | chr11:108183372-108384391 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
