Variant report

Variant	rs3218687
Chromosome Location	chr11:108139183-108139184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11212629	1.00[AMR][1000 genomes]
rs11821287	1.00[AMR][1000 genomes]
rs11824991	1.00[AMR][1000 genomes]
rs2227924	1.00[AMR][1000 genomes]
rs2229019	1.00[AMR][1000 genomes]
rs3212321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218710	1.00[AMR][1000 genomes]
rs4987897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987932	1.00[AMR][1000 genomes]
rs4987940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987953	1.00[AMR][1000 genomes]
rs4987963	1.00[AMR][1000 genomes]
rs4988024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988043	1.00[AMR][1000 genomes]
rs4988051	1.00[AMR][1000 genomes]
rs4988059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988077	1.00[AMR][1000 genomes]
rs4988121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988132	1.00[AMR][1000 genomes]
rs55760417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56833752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56964917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567061	1.00[AMR][1000 genomes]
rs57627058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58765943	1.00[AMR][1000 genomes]
rs59559366	1.00[AMR][1000 genomes]
rs60358760	1.00[AMR][1000 genomes]
rs61144945	1.00[AMR][1000 genomes]
rs61504979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
2	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
4	chr11:108096400-108156400	Weak transcription	NHLF	lung
5	chr11:108104200-108147400	Weak transcription	Gastric	stomach
6	chr11:108104600-108144000	Weak transcription	Lung	lung
7	chr11:108108200-108144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:108108400-108184800	Weak transcription	NHEK	skin
9	chr11:108108800-108147600	Weak transcription	Psoas Muscle	Psoas
10	chr11:108113800-108147200	Weak transcription	Aorta	Aorta
11	chr11:108118600-108140200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:108122000-108142200	Weak transcription	Right Ventricle	heart
13	chr11:108122000-108147400	Weak transcription	Spleen	Spleen
14	chr11:108126000-108142000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:108126000-108153600	Weak transcription	HUVEC	blood vessel
16	chr11:108126200-108157600	Weak transcription	HMEC	breast
17	chr11:108126800-108149200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:108128800-108140400	Weak transcription	Small Intestine	intestine
19	chr11:108128800-108142600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:108129000-108143200	Weak transcription	Ovary	ovary
21	chr11:108129000-108145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:108129000-108148000	Weak transcription	Pancreas	Pancrea
23	chr11:108129000-108155400	Weak transcription	HSMMtube	muscle
24	chr11:108129200-108142000	Weak transcription	Fetal Kidney	kidney
25	chr11:108129400-108142200	Weak transcription	Brain Angular Gyrus	brain
26	chr11:108129600-108142000	Weak transcription	Brain Anterior Caudate	brain
27	chr11:108129600-108142000	Weak transcription	Fetal Brain Male	brain
28	chr11:108129800-108139200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:108129800-108139600	Weak transcription	HepG2	liver
30	chr11:108129800-108141800	Weak transcription	K562	blood
31	chr11:108129800-108142000	Weak transcription	Brain Substantia Nigra	brain
32	chr11:108129800-108146600	Weak transcription	Colonic Mucosa	Colon
33	chr11:108129800-108147400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:108130000-108139800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:108130600-108140000	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:108130600-108143000	Weak transcription	NH-A	brain
37	chr11:108131200-108139200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:108131200-108139200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:108131200-108139200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:108131200-108139200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:108131200-108139200	Weak transcription	GM12878-XiMat	blood
42	chr11:108131200-108140200	Weak transcription	Placenta	Placenta
43	chr11:108131200-108141800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:108131200-108145400	Weak transcription	Fetal Intestine Large	intestine
45	chr11:108131200-108147400	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:108131400-108139200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:108131400-108139800	Weak transcription	Fetal Lung	lung
48	chr11:108131400-108140000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:108131400-108141400	Weak transcription	Brain Germinal Matrix	brain
50	chr11:108131400-108142000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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