Variant report

Variant	rs57627058
Chromosome Location	chr11:108147081-108147082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108143540..108146436-chr11:108147074..108149154,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11212629	1.00[AMR][1000 genomes]
rs11821287	1.00[AMR][1000 genomes]
rs11824991	1.00[AMR][1000 genomes]
rs2227924	1.00[AMR][1000 genomes]
rs2229019	1.00[AMR][1000 genomes]
rs3212321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218710	1.00[AMR][1000 genomes]
rs4987897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987932	1.00[AMR][1000 genomes]
rs4987940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987953	1.00[AMR][1000 genomes]
rs4987963	1.00[AMR][1000 genomes]
rs4988024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988043	1.00[AMR][1000 genomes]
rs4988051	1.00[AMR][1000 genomes]
rs4988059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988077	1.00[AMR][1000 genomes]
rs4988121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988132	1.00[AMR][1000 genomes]
rs55760417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56833752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56964917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567061	1.00[AMR][1000 genomes]
rs58765943	1.00[AMR][1000 genomes]
rs59559366	1.00[AMR][1000 genomes]
rs60358760	1.00[AMR][1000 genomes]
rs61144945	1.00[AMR][1000 genomes]
rs61504979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
2	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
4	chr11:108096400-108156400	Weak transcription	NHLF	lung
5	chr11:108104200-108147400	Weak transcription	Gastric	stomach
6	chr11:108108400-108184800	Weak transcription	NHEK	skin
7	chr11:108108800-108147600	Weak transcription	Psoas Muscle	Psoas
8	chr11:108113800-108147200	Weak transcription	Aorta	Aorta
9	chr11:108122000-108147400	Weak transcription	Spleen	Spleen
10	chr11:108126000-108153600	Weak transcription	HUVEC	blood vessel
11	chr11:108126200-108157600	Weak transcription	HMEC	breast
12	chr11:108126800-108149200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:108129000-108148000	Weak transcription	Pancreas	Pancrea
14	chr11:108129000-108155400	Weak transcription	HSMMtube	muscle
15	chr11:108129800-108147400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:108131200-108147400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:108131400-108147400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:108131800-108147200	Weak transcription	Thymus	Thymus
19	chr11:108131800-108147400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:108132200-108147200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:108132200-108147200	Weak transcription	Fetal Intestine Small	intestine
23	chr11:108132200-108147400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:108132200-108148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:108137400-108147400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:108137400-108147800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:108137400-108148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:108137600-108148400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:108137600-108150600	Strong transcription	Fetal Thymus	thymus
30	chr11:108137800-108147400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:108137800-108148200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:108137800-108149200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:108137800-108150000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:108137800-108150800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:108137800-108159400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:108137800-108160400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:108138400-108209400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:108139000-108149400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:108139000-108150600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:108139200-108147200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:108139200-108163400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:108139200-108208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:108140200-108149400	Strong transcription	Placenta	Placenta
45	chr11:108140400-108148600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:108140800-108149200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:108141200-108181800	Weak transcription	Small Intestine	intestine
48	chr11:108141800-108163600	Strong transcription	Adipose Nuclei	Adipose
49	chr11:108142000-108147600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:108142000-108148600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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