Variant report

Variant	rs56964917
Chromosome Location	chr11:108068784-108068785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108067162..108069860-chr11:108093506..108095318,2	MCF-7	breast:
2	chr11:108066354..108069293-chr11:108092203..108093998,2	K562	blood:
3	chr11:108027496..108029071-chr11:108067819..108069452,2	K562	blood:
4	chr11:108063429..108067423-chr11:108068069..108071362,4	K562	blood:
5	chr11:107993563..107996338-chr11:108068395..108070955,2	K562	blood:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11821287	1.00[AMR][1000 genomes]
rs11824991	1.00[AMR][1000 genomes]
rs2227924	1.00[AMR][1000 genomes]
rs2229019	1.00[AMR][1000 genomes]
rs3212321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218673	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218710	1.00[AMR][1000 genomes]
rs4987897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987930	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987932	1.00[AMR][1000 genomes]
rs4987940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987953	1.00[AMR][1000 genomes]
rs4987963	1.00[AMR][1000 genomes]
rs4988024	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988043	1.00[AMR][1000 genomes]
rs4988051	1.00[AMR][1000 genomes]
rs4988059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988077	1.00[AMR][1000 genomes]
rs4988121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988132	1.00[AMR][1000 genomes]
rs55760417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973324	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55982799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56833752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567061	1.00[AMR][1000 genomes]
rs57627058	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58765943	1.00[AMR][1000 genomes]
rs59559366	1.00[AMR][1000 genomes]
rs60358760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61144945	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61504979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:108017000-108075000	Strong transcription	Dnd41	blood
6	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
8	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:108027000-108069800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
12	chr11:108040800-108069600	Weak transcription	Psoas Muscle	Psoas
13	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
14	chr11:108042600-108069000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:108042600-108069200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:108043400-108070600	Weak transcription	A549	lung
17	chr11:108044600-108070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:108046200-108069600	Weak transcription	Stomach Mucosa	stomach
19	chr11:108046400-108070200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:108053600-108069400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:108053600-108069400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
24	chr11:108055600-108069600	Weak transcription	Pancreas	Pancrea
25	chr11:108056800-108070000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:108057000-108069400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:108057000-108069400	Weak transcription	Gastric	stomach
28	chr11:108057000-108069400	Weak transcription	Spleen	Spleen
29	chr11:108057000-108069600	Weak transcription	Aorta	Aorta
30	chr11:108057000-108070600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
32	chr11:108058200-108069800	Weak transcription	Esophagus	oesophagus
33	chr11:108060000-108070000	Weak transcription	HSMMtube	muscle
34	chr11:108060000-108070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:108060000-108070800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:108060000-108077000	Weak transcription	NHLF	lung
38	chr11:108060200-108069400	Weak transcription	Brain Substantia Nigra	brain
39	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
40	chr11:108061400-108070000	Weak transcription	Brain Angular Gyrus	brain
41	chr11:108061600-108069200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:108061800-108069400	Weak transcription	Brain Anterior Caudate	brain
43	chr11:108061800-108069400	Weak transcription	Thymus	Thymus
44	chr11:108061800-108069600	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:108061800-108069800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:108061800-108075000	Weak transcription	Ovary	ovary
47	chr11:108062000-108069200	Weak transcription	Fetal Brain Female	brain
48	chr11:108062000-108069600	Weak transcription	Right Ventricle	heart
49	chr11:108062200-108069800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:108062400-108069400	Weak transcription	Fetal Muscle Leg	muscle

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