Variant report

Variant	rs55982799
Chromosome Location	chr11:108186970-108186971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11212629	1.00[AMR][1000 genomes]
rs11821287	1.00[AMR][1000 genomes]
rs11824991	1.00[AMR][1000 genomes]
rs2227924	1.00[AMR][1000 genomes]
rs2229019	1.00[AMR][1000 genomes]
rs3212321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3218710	1.00[AMR][1000 genomes]
rs4987897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987932	1.00[AMR][1000 genomes]
rs4987940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987953	1.00[AMR][1000 genomes]
rs4987963	1.00[AMR][1000 genomes]
rs4988024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988043	1.00[AMR][1000 genomes]
rs4988051	1.00[AMR][1000 genomes]
rs4988059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988077	1.00[AMR][1000 genomes]
rs4988121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988132	1.00[AMR][1000 genomes]
rs55760417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56833752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56964917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567061	1.00[AMR][1000 genomes]
rs57627058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58765943	1.00[AMR][1000 genomes]
rs59559366	1.00[AMR][1000 genomes]
rs60358760	1.00[AMR][1000 genomes]
rs61144945	1.00[AMR][1000 genomes]
rs61504979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv1821877	chr11:108158134-108219339	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:108138400-108209400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:108139200-108208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:108144400-108200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:108147200-108210800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:108148200-108225600	Weak transcription	Esophagus	oesophagus
10	chr11:108148600-108202600	Weak transcription	Psoas Muscle	Psoas
11	chr11:108148600-108208800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:108148600-108225600	Weak transcription	Gastric	stomach
13	chr11:108149200-108208600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:108149400-108211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:108149600-108209000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:108149600-108209600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:108150200-108208800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:108151400-108210000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:108151600-108188600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:108154000-108193600	Weak transcription	Colonic Mucosa	Colon
21	chr11:108158200-108209800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:108160200-108212600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr11:108160400-108211000	Strong transcription	Primary B cells from cord blood	blood
24	chr11:108160800-108190000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:108161000-108209600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:108161200-108210400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:108162000-108208800	Strong transcription	Dnd41	blood
28	chr11:108162800-108205800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:108162800-108209400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:108163600-108200200	Weak transcription	Spleen	Spleen
31	chr11:108165400-108209000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:108171200-108199400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:108172600-108193600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:108173600-108188800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:108173600-108191600	Weak transcription	NHLF	lung
36	chr11:108174000-108194800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:108175400-108199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:108176000-108191000	Weak transcription	A549	lung
39	chr11:108176000-108192800	Weak transcription	Fetal Brain Male	brain
40	chr11:108176400-108225400	Weak transcription	Right Ventricle	heart
41	chr11:108177200-108208800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:108178600-108191400	Weak transcription	Fetal Intestine Large	intestine
43	chr11:108178800-108191000	Weak transcription	Brain Angular Gyrus	brain
44	chr11:108178800-108191200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:108179000-108193400	Weak transcription	Fetal Heart	heart
46	chr11:108179000-108198600	Weak transcription	HSMMtube	muscle
47	chr11:108179200-108191200	Weak transcription	Brain Substantia Nigra	brain
48	chr11:108179600-108187200	Strong transcription	GM12878-XiMat	blood
49	chr11:108179600-108197000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:108179800-108194200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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