Variant report

Variant	rs11234482
Chromosome Location	chr11:85642908-85642909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:85642893-85642943	SK-N-MC	brain:	n/a
2	chr11:85642893-85642943	SAEC	small airway:	n/a
3	chr11:85642893-85642943	BE2_C	brain:	n/a
4	chr11:85642893-85642943	NT2-D1	testis:	n/a
5	chr11:85642893-85642943	Caco-2	colon:	n/a
6	chr11:85642893-85642943	MCF10A-Er-Src	breast:	n/a
7	chr11:85642893-85642943	LNCaP	prostate:	n/a
8	chr11:85642893-85642943	T-47D	breast:	n/a
9	chr11:85642893-85642943	HMEC	breast:	n/a
10	chr11:85642893-85642943	SKMC	muscle:	n/a
11	chr11:85642893-85642943	HepG2	liver:	n/a
12	chr11:85642893-85642943	K562	blood:	n/a
13	chr11:85642893-85642943	HRE	kidney:	n/a
14	chr11:85642893-85642943	ProgFib	skin:	n/a
15	chr11:85642893-85642943	GM12878	blood:	n/a
16	chr11:85642893-85642943	SK-N-SH	brain:	n/a
17	chr11:85642893-85642943	SK-N-SH_RA	brain:	n/a
18	chr11:85642893-85642943	NHDF-neo	bronchial:	n/a
19	chr11:85642893-85642943	AG04449	skin:	fetal
20	chr11:85642893-85642943	BJ	skin:	n/a
21	chr11:85642893-85642943	AG09319	gingival:	n/a
22	chr11:85642893-85642943	HCPEpiC	choroid plexus:	n/a
23	chr11:85642893-85642943	HCF	heart:	n/a
24	chr11:85642893-85642943	IMR90	lung:	fetal
25	chr11:85642893-85642943	GM06990	blood:	n/a
26	chr11:85642893-85642943	HAEpiC	amniotic membrane:	n/a
27	chr11:85642893-85642943	ECC-1	luminal epithelium:	n/a
28	chr11:85642893-85642943	Hepatocyte	liver:	n/a
29	chr11:85642893-85642943	Jurkat	blood:	n/a
30	chr11:85642893-85642943	GM12892	blood:	n/a
31	chr11:85642893-85642943	HL-60	blood:	n/a
32	chr11:85642893-85642943	HEEpiC	esophagus:	n/a
33	chr11:85642893-85642943	NH-A	brain:	n/a
34	chr11:85642893-85642943	A549	lung:	n/a
35	chr11:85642893-85642943	PrEC	prostate:	n/a
36	chr11:85642893-85642943	HRPEpiC	eye:	n/a
37	chr11:85642893-85642943	ovcar-3	ovarian:	n/a
38	chr11:85642893-85642943	MCF-7	breast:	n/a
39	chr11:85642893-85642943	Hela-S3	cervix:	n/a
40	chr11:85642893-85642943	HIPEpiC	eye:	n/a
41	chr11:85642893-85642943	AG09309	skin:	n/a
42	chr11:85642893-85642943	PFSK-1	brain:	n/a
43	chr11:85642893-85642943	HEK293	kidney:	embryo
44	chr11:85642893-85642943	HCT-116	colon:	n/a
45	chr11:85642893-85642943	HCM	heart:	n/a
46	chr11:85642893-85642943	AG10803	skin:	n/a
47	chr11:85642893-85642943	NHBE	bronchial:	n/a
48	chr11:85642893-85642943	H1-hESC	embryonic stem cell:	embryo
49	chr11:85642893-85642943	HUVEC	blood vessel:	n/a
50	chr11:85642893-85642943	GM19239	blood:	n/a

No data

Variant related genes	Relation type
SLC25A1P1	CpG island

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10501606	1.00[AMR][1000 genomes]
rs10898429	1.00[AMR][1000 genomes]
rs11234484	1.00[AMR][1000 genomes]
rs11234490	1.00[AMR][1000 genomes]
rs11234498	1.00[AMR][1000 genomes]
rs11234506	1.00[AMR][1000 genomes]
rs11234509	1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	1.00[AMR][1000 genomes]
rs11234526	1.00[AMR][1000 genomes]
rs11234527	1.00[AMR][1000 genomes]
rs11234528	1.00[AMR][1000 genomes]
rs11234529	1.00[AMR][1000 genomes]
rs11234530	1.00[AMR][1000 genomes]
rs12270430	1.00[AMR][1000 genomes]
rs12270938	1.00[AMR][1000 genomes]
rs12272711	1.00[AMR][1000 genomes]
rs12276323	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[AMR][1000 genomes]
rs12283011	1.00[AMR][1000 genomes]
rs12283160	1.00[AMR][1000 genomes]
rs12283400	1.00[AMR][1000 genomes]
rs12283463	1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12286862	1.00[AMR][1000 genomes]
rs12288262	1.00[AMR][1000 genomes]
rs12290708	1.00[AMR][1000 genomes]
rs12292101	1.00[AMR][1000 genomes]
rs12295435	1.00[AMR][1000 genomes]
rs13377593	1.00[AMR][1000 genomes]
rs9804530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85638400-85645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:85641200-85645600	Weak transcription	Right Atrium	heart
3	chr11:85641600-85643400	Enhancers	Liver	Liver
4	chr11:85641800-85643600	Enhancers	HepG2	liver
5	chr11:85642000-85643000	Enhancers	Fetal Intestine Small	intestine

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