Variant report

Variant	rs12276323
Chromosome Location	chr11:85810427-85810428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501606	1.00[AMR][1000 genomes]
rs10898429	1.00[AMR][1000 genomes]
rs11234482	1.00[AMR][1000 genomes]
rs11234484	1.00[AMR][1000 genomes]
rs11234490	1.00[AMR][1000 genomes]
rs11234498	1.00[AMR][1000 genomes]
rs11234506	1.00[AMR][1000 genomes]
rs11234509	1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	1.00[AMR][1000 genomes]
rs11234526	1.00[AMR][1000 genomes]
rs11234527	1.00[AMR][1000 genomes]
rs11234528	1.00[AMR][1000 genomes]
rs11234529	1.00[AMR][1000 genomes]
rs11234530	1.00[AMR][1000 genomes]
rs11234553	1.00[AMR][1000 genomes]
rs11234557	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270430	1.00[AMR][1000 genomes]
rs12270938	1.00[AMR][1000 genomes]
rs12272711	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[AMR][1000 genomes]
rs12283011	1.00[AMR][1000 genomes]
rs12283160	1.00[AMR][1000 genomes]
rs12283400	1.00[AMR][1000 genomes]
rs12283463	1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12286862	1.00[AMR][1000 genomes]
rs12288262	1.00[AMR][1000 genomes]
rs12290708	1.00[AMR][1000 genomes]
rs12292101	1.00[AMR][1000 genomes]
rs12293426	1.00[AMR][1000 genomes]
rs12295435	1.00[AMR][1000 genomes]
rs13377593	1.00[AMR][1000 genomes]
rs9804530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85803400-85810800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:85804400-85811000	Weak transcription	Osteobl	bone
3	chr11:85809600-85811000	Weak transcription	K562	blood
4	chr11:85810400-85811200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:85810400-85811200	Enhancers	Liver	Liver
6	chr11:85810400-85811400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:85810400-85811400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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