Variant report

Variant	rs11234553
Chromosome Location	chr11:85848066-85848067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85844022..85845904-chr11:85847037..85849621,3	K562	blood:
2	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
3	chr11:85838134..85840505-chr11:85845229..85848211,2	K562	blood:
4	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
5	chr11:85846668..85849486-chr11:85860309..85862549,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10501606	1.00[AMR][1000 genomes]
rs10898429	1.00[AMR][1000 genomes]
rs11234490	1.00[AMR][1000 genomes]
rs11234498	1.00[AMR][1000 genomes]
rs11234506	1.00[AMR][1000 genomes]
rs11234509	1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	1.00[AMR][1000 genomes]
rs11234526	1.00[AMR][1000 genomes]
rs11234527	1.00[AMR][1000 genomes]
rs11234528	1.00[AMR][1000 genomes]
rs11234529	1.00[AMR][1000 genomes]
rs11234530	1.00[AMR][1000 genomes]
rs11234557	1.00[AMR][1000 genomes]
rs12270430	1.00[AMR][1000 genomes]
rs12270938	1.00[AMR][1000 genomes]
rs12272711	1.00[AMR][1000 genomes]
rs12276323	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[AMR][1000 genomes]
rs12283011	1.00[AMR][1000 genomes]
rs12283160	1.00[AMR][1000 genomes]
rs12283400	1.00[AMR][1000 genomes]
rs12283463	1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12288262	1.00[AMR][1000 genomes]
rs12290708	1.00[AMR][1000 genomes]
rs12292101	1.00[AMR][1000 genomes]
rs12293426	1.00[AMR][1000 genomes]
rs12295435	1.00[AMR][1000 genomes]
rs13377593	1.00[AMR][1000 genomes]
rs9804530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85843600-85848200	Enhancers	Fetal Intestine Large	intestine
2	chr11:85843800-85848200	Enhancers	Fetal Intestine Small	intestine
3	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:85845400-85849400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:85845600-85848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
7	chr11:85846000-85851600	Weak transcription	Right Atrium	heart
8	chr11:85846400-85849800	Weak transcription	Liver	Liver
9	chr11:85846400-85851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
11	chr11:85846600-85848200	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:85846600-85848600	Enhancers	K562	blood
13	chr11:85846800-85849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:85847200-85848200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:85847400-85848200	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:85847400-85849400	Weak transcription	Placenta	Placenta
17	chr11:85847400-85855600	Weak transcription	Stomach Mucosa	stomach
18	chr11:85848000-85848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:85848000-85849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:85848000-85849600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:85848000-85849800	Weak transcription	Adipose Nuclei	Adipose
22	chr11:85848000-85849800	Weak transcription	Osteobl	bone
23	chr11:85848000-85851400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:85848000-85851400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:85848000-85851400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:85848000-85851400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:85848000-85851400	Weak transcription	Brain Substantia Nigra	brain
28	chr11:85848000-85851600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:85848000-85852600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
31	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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