Variant report

Variant	rs12293426
Chromosome Location	chr11:85844810-85844811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85834004..85837097-chr11:85843362..85846409,3	K562	blood:
2	chr11:85843188..85845869-chr11:85853457..85855853,3	K562	blood:
3	chr11:85844122..85845739-chr11:85912791..85915095,2	K562	blood:
4	chr11:85839162..85840791-chr11:85844170..85846014,2	MCF-7	breast:
5	chr11:85843188..85847457-chr11:85851977..85855853,7	K562	blood:
6	chr11:85844022..85845904-chr11:85847037..85849621,3	K562	blood:
7	chr11:85837219..85838981-chr11:85844056..85845625,2	K562	blood:
8	chr11:85778747..85782250-chr11:85844102..85847202,4	K562	blood:
9	chr11:85844772..85849892-chr11:85856973..85861809,6	K562	blood:
10	chr11:85808677..85810981-chr11:85843270..85845709,2	K562	blood:
11	chr11:85834930..85836499-chr11:85844067..85846409,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501606	1.00[AMR][1000 genomes]
rs10898429	1.00[AMR][1000 genomes]
rs11234490	1.00[AMR][1000 genomes]
rs11234498	1.00[AMR][1000 genomes]
rs11234506	1.00[AMR][1000 genomes]
rs11234509	1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	1.00[AMR][1000 genomes]
rs11234526	1.00[AMR][1000 genomes]
rs11234527	1.00[AMR][1000 genomes]
rs11234528	1.00[AMR][1000 genomes]
rs11234529	1.00[AMR][1000 genomes]
rs11234530	1.00[AMR][1000 genomes]
rs11234553	1.00[AMR][1000 genomes]
rs11234557	1.00[AMR][1000 genomes]
rs12270430	1.00[AMR][1000 genomes]
rs12270938	1.00[AMR][1000 genomes]
rs12272711	1.00[AMR][1000 genomes]
rs12276323	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[AMR][1000 genomes]
rs12283011	1.00[AMR][1000 genomes]
rs12283160	1.00[AMR][1000 genomes]
rs12283400	1.00[AMR][1000 genomes]
rs12283463	1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12286862	1.00[AMR][1000 genomes]
rs12288262	1.00[AMR][1000 genomes]
rs12290708	1.00[AMR][1000 genomes]
rs12292101	1.00[AMR][1000 genomes]
rs12295435	1.00[AMR][1000 genomes]
rs13377593	1.00[AMR][1000 genomes]
rs9804530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:85838200-85846800	Weak transcription	Placenta	Placenta
3	chr11:85838800-85845000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:85839000-85845600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:85840000-85845600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:85840000-85847200	Weak transcription	Ovary	ovary
7	chr11:85843200-85845200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:85843600-85845200	Enhancers	K562	blood
9	chr11:85843600-85848200	Enhancers	Fetal Intestine Large	intestine
10	chr11:85843800-85845000	Enhancers	Small Intestine	intestine
11	chr11:85843800-85845600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:85843800-85846800	Enhancers	HepG2	liver
13	chr11:85843800-85848200	Enhancers	Fetal Intestine Small	intestine
14	chr11:85844200-85845600	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:85844400-85846600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:85844600-85845200	Enhancers	Fetal Kidney	kidney
17	chr11:85844800-85845000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:85844800-85845600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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