Variant report

Variant	rs11234490
Chromosome Location	chr11:85664399-85664400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85663084..85664882-chr11:85955356..85956951,2	K562	blood:
2	chr11:85659757..85662589-chr11:85664114..85665919,2	K562	blood:
3	chr11:85663607..85666587-chr11:86015226..86016933,2	K562	blood:
4	chr11:85658382..85661257-chr11:85664114..85666367,2	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501606	1.00[AMR][1000 genomes]
rs10898429	0.87[ASW][hapmap];1.00[AMR][1000 genomes]
rs11234423	1.00[MEX][hapmap]
rs11234474	1.00[MEX][hapmap]
rs11234482	1.00[AMR][1000 genomes]
rs11234484	1.00[AMR][1000 genomes]
rs11234498	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234506	1.00[AMR][1000 genomes]
rs11234509	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	1.00[AMR][1000 genomes]
rs11234525	0.80[YRI][hapmap]
rs11234526	0.81[MKK][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs11234527	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11234528	1.00[AMR][1000 genomes]
rs11234529	1.00[AMR][1000 genomes]
rs11234530	1.00[AMR][1000 genomes]
rs11234553	1.00[AMR][1000 genomes]
rs11234557	1.00[AMR][1000 genomes]
rs12270430	1.00[AMR][1000 genomes]
rs12270938	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274978	1.00[MEX][hapmap]
rs12276323	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12283011	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283160	1.00[AMR][1000 genomes]
rs12283400	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283463	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12286862	1.00[AMR][1000 genomes]
rs12288262	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs12290218	1.00[MEX][hapmap]
rs12290708	1.00[AMR][1000 genomes]
rs12292101	1.00[AMR][1000 genomes]
rs12293426	1.00[AMR][1000 genomes]
rs12294393	0.89[YRI][hapmap]
rs12295435	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377593	0.86[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9804530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646600-85667400	Weak transcription	Gastric	stomach
2	chr11:85652800-85664400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:85652800-85668800	Weak transcription	Small Intestine	intestine
4	chr11:85656000-85679800	Weak transcription	Fetal Brain Male	brain
5	chr11:85657200-85665600	Weak transcription	Lung	lung
6	chr11:85657600-85665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:85657600-85666600	Weak transcription	Spleen	Spleen
8	chr11:85658400-85666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:85658400-85667400	Weak transcription	Pancreas	Pancrea
10	chr11:85658600-85664400	Weak transcription	Primary B cells from cord blood	blood
11	chr11:85658600-85664400	Weak transcription	Liver	Liver
12	chr11:85658600-85664600	Weak transcription	Fetal Thymus	thymus
13	chr11:85658600-85665400	Weak transcription	Aorta	Aorta
14	chr11:85658600-85665400	Weak transcription	Left Ventricle	heart
15	chr11:85658600-85667400	Weak transcription	Esophagus	oesophagus
16	chr11:85658600-85673000	Weak transcription	Right Ventricle	heart
17	chr11:85658800-85664600	Weak transcription	Thymus	Thymus
18	chr11:85658800-85665400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:85659000-85665000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:85659200-85664400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:85659400-85664400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:85659400-85664400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:85659400-85664600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:85659400-85665400	Weak transcription	Right Atrium	heart
25	chr11:85659400-85665400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:85659400-85666400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
28	chr11:85659600-85664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:85659600-85664400	Weak transcription	HSMMtube	muscle
30	chr11:85659600-85664600	Weak transcription	Fetal Stomach	stomach
31	chr11:85659600-85666200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:85659600-85666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:85659800-85666800	Weak transcription	Fetal Lung	lung
34	chr11:85660000-85666400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:85660200-85664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:85660200-85664400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:85660200-85664400	Weak transcription	Adipose Nuclei	Adipose
38	chr11:85660200-85664400	Weak transcription	HSMM	muscle
39	chr11:85660200-85664400	Weak transcription	NH-A	brain
40	chr11:85660200-85664400	Weak transcription	NHLF	lung
41	chr11:85660200-85664600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:85660200-85664600	Weak transcription	Brain Substantia Nigra	brain
43	chr11:85660200-85664600	Weak transcription	Fetal Kidney	kidney
44	chr11:85660200-85664800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:85660200-85665000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:85660200-85666200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:85660200-85666400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:85660200-85666400	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:85660200-85666400	Weak transcription	A549	lung
50	chr11:85660200-85666400	Weak transcription	Hela-S3	cervix

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