Variant report
| Variant | rs12283835 |
|---|---|
| Chromosome Location | chr11:85793955-85793956 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:85781335..85783315-chr11:85791382..85794341,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10501606 | 1.00[AMR][1000 genomes] |
| rs10898429 | 1.00[AMR][1000 genomes] |
| rs11234482 | 1.00[AMR][1000 genomes] |
| rs11234484 | 1.00[AMR][1000 genomes] |
| rs11234490 | 1.00[AMR][1000 genomes] |
| rs11234498 | 1.00[AMR][1000 genomes] |
| rs11234506 | 1.00[AMR][1000 genomes] |
| rs11234509 | 1.00[AMR][1000 genomes] |
| rs11234516 | 1.00[AMR][1000 genomes] |
| rs11234521 | 1.00[AMR][1000 genomes] |
| rs11234522 | 1.00[AMR][1000 genomes] |
| rs11234526 | 1.00[AMR][1000 genomes] |
| rs11234527 | 1.00[AMR][1000 genomes] |
| rs11234528 | 1.00[AMR][1000 genomes] |
| rs11234529 | 1.00[AMR][1000 genomes] |
| rs11234530 | 1.00[AMR][1000 genomes] |
| rs11234553 | 1.00[AMR][1000 genomes] |
| rs11234557 | 1.00[AMR][1000 genomes] |
| rs12270430 | 1.00[AMR][1000 genomes] |
| rs12270938 | 1.00[AMR][1000 genomes] |
| rs12272711 | 1.00[AMR][1000 genomes] |
| rs12276323 | 1.00[AMR][1000 genomes] |
| rs12278254 | 1.00[AMR][1000 genomes] |
| rs12280026 | 1.00[AMR][1000 genomes] |
| rs12283011 | 1.00[AMR][1000 genomes] |
| rs12283160 | 1.00[AMR][1000 genomes] |
| rs12283400 | 1.00[AMR][1000 genomes] |
| rs12283463 | 1.00[AMR][1000 genomes] |
| rs12286862 | 1.00[AMR][1000 genomes] |
| rs12288262 | 1.00[AMR][1000 genomes] |
| rs12290708 | 1.00[AMR][1000 genomes] |
| rs12292101 | 1.00[AMR][1000 genomes] |
| rs12293426 | 1.00[AMR][1000 genomes] |
| rs12295435 | 1.00[AMR][1000 genomes] |
| rs13377593 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9804530 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050948 | chr11:85756325-85968665 | Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv541117 | chr11:85756325-85968665 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:85781400-85796000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr11:85791600-85801200 | Weak transcription | Pancreas | Pancrea |
