Variant report

Variant	rs9804530
Chromosome Location	chr11:85764437-85764438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85760823..85766402-chr11:85776742..85780604,5	K562	blood:
2	chr11:85759414..85762040-chr11:85764190..85765879,2	K562	blood:
3	chr11:85763624..85765571-chr11:85766544..85768269,2	MCF-7	breast:
4	chr11:85758317..85760052-chr11:85763851..85765392,2	MCF-7	breast:
5	chr11:85763399..85766390-chr11:85766683..85769520,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10898429	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs11234482	1.00[AMR][1000 genomes]
rs11234484	1.00[AMR][1000 genomes]
rs11234490	1.00[AMR][1000 genomes]
rs11234498	1.00[AMR][1000 genomes]
rs11234506	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs11234509	1.00[AMR][1000 genomes]
rs11234516	1.00[AMR][1000 genomes]
rs11234521	1.00[AMR][1000 genomes]
rs11234522	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234525	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11234526	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234527	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234528	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234529	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234530	0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11234553	1.00[AMR][1000 genomes]
rs11234557	1.00[AMR][1000 genomes]
rs12270430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270938	1.00[AMR][1000 genomes]
rs12272711	1.00[AMR][1000 genomes]
rs12276323	1.00[AMR][1000 genomes]
rs12278254	1.00[AMR][1000 genomes]
rs12280026	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283011	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12283160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283400	1.00[AMR][1000 genomes]
rs12283463	1.00[AMR][1000 genomes]
rs12283835	1.00[AMR][1000 genomes]
rs12286862	1.00[AMR][1000 genomes]
rs12288262	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12290708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292101	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs12293426	1.00[AMR][1000 genomes]
rs12295435	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13377593	1.00[AMR][1000 genomes]
rs17817153	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85752400-85768400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:85752800-85768200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:85752800-85776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:85753200-85764600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:85753200-85768000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:85754200-85765200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:85754400-85768200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:85756000-85765400	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:85756000-85767000	Enhancers	Brain Hippocampus Middle	brain
10	chr11:85756000-85776000	Weak transcription	Esophagus	oesophagus
11	chr11:85756600-85765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:85756600-85775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:85758200-85765600	Enhancers	Ovary	ovary
14	chr11:85758400-85765400	Weak transcription	HSMM	muscle
15	chr11:85758600-85774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:85759000-85765400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:85759000-85773600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:85759400-85766000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:85759400-85768200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr11:85759400-85773800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:85759400-85774400	Weak transcription	NHEK	skin
22	chr11:85759800-85772600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:85760200-85773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:85760400-85772000	Weak transcription	Pancreas	Pancrea
25	chr11:85760600-85765000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:85761000-85768800	Genic enhancers	K562	blood
27	chr11:85761400-85768000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr11:85762000-85766000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:85762000-85766000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:85762000-85766000	Enhancers	Left Ventricle	heart
31	chr11:85762000-85766000	ZNF genes & repeats	GM12878-XiMat	blood
32	chr11:85762200-85773800	Weak transcription	NHDF-Ad	bronchial
33	chr11:85762400-85766000	Enhancers	Psoas Muscle	Psoas
34	chr11:85762400-85773000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:85762600-85764800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:85762800-85766600	Enhancers	Primary B cells from peripheral blood	blood
37	chr11:85763000-85766600	Enhancers	Primary T cells from cord blood	blood
38	chr11:85763000-85766800	Enhancers	Adipose Nuclei	Adipose
39	chr11:85763000-85767000	Enhancers	Liver	Liver
40	chr11:85763000-85767600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr11:85763200-85766000	Enhancers	Right Atrium	heart
42	chr11:85763200-85772800	Weak transcription	NHLF	lung
43	chr11:85763400-85764600	Enhancers	Stomach Mucosa	stomach
44	chr11:85763400-85766000	Enhancers	Primary B cells from cord blood	blood
45	chr11:85763400-85767400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:85763600-85764600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:85763600-85765000	Flanking Active TSS	Hela-S3	cervix
48	chr11:85763600-85765600	Enhancers	HUVEC	blood vessel
49	chr11:85763600-85766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr11:85763600-85766000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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