Variant report

Variant	rs11237106
Chromosome Location	chr11:76886718-76886719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:76885653-76887437	NB4	blood:	n/a	chr11:76886190-76886199
2	CTBP2	chr11:76886481-76887363	H1-hESC	embryonic stem cell:	n/a	n/a
3	MYC	chr11:76885990-76887544	NB4	blood:	n/a	chr11:76886190-76886199
4	MAX	chr11:76886580-76887256	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr11:76886277-76887269	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76866046..76867618-chr11:76885201..76887401,2	MCF-7	breast:
2	chr11:76762488..76764509-chr11:76886200..76888160,2	MCF-7	breast:
3	chr11:76878152..76880429-chr11:76885737..76888669,2	K562	blood:

Variant related genes	Relation type
MYO7A	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10466706	0.88[EUR][1000 genomes]
rs10466707	0.88[EUR][1000 genomes]
rs10793239	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899356	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899357	0.88[EUR][1000 genomes]
rs10899358	0.88[EUR][1000 genomes]
rs10899359	0.88[EUR][1000 genomes]
rs10899360	0.85[EUR][1000 genomes]
rs1109162	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109163	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1109977	0.88[EUR][1000 genomes]
rs11237109	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11237110	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11237111	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11237118	0.83[EUR][1000 genomes]
rs11237119	0.83[EUR][1000 genomes]
rs11237120	0.80[EUR][1000 genomes]
rs11237121	0.82[EUR][1000 genomes]
rs12421897	0.85[EUR][1000 genomes]
rs12577334	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577724	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12792197	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12802853	0.85[EUR][1000 genomes]
rs12806868	0.84[EUR][1000 genomes]
rs1944034	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076968	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076969	0.82[AFR][1000 genomes]
rs2077198	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155179	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2186659	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2276283	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276285	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276286	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276287	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276288	0.84[EUR][1000 genomes]
rs2276294	0.83[EUR][1000 genomes]
rs3740762	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781689	0.81[EUR][1000 genomes]
rs3781690	0.84[EUR][1000 genomes]
rs3781691	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3781693	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3781694	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3781695	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944148	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945155	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945157	0.84[EUR][1000 genomes]
rs4945158	0.84[EUR][1000 genomes]
rs4945159	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4945160	0.82[EUR][1000 genomes]
rs7117606	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7122023	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7481443	0.84[EUR][1000 genomes]
rs7927472	0.81[EUR][1000 genomes]
rs7932992	0.85[EUR][1000 genomes]
rs7933106	0.85[EUR][1000 genomes]
rs7942355	0.88[EUR][1000 genomes]
rs7943136	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7947922	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7952285	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs867505	0.88[EUR][1000 genomes]
rs867507	0.87[EUR][1000 genomes]
rs867508	0.88[EUR][1000 genomes]
rs948958	0.88[EUR][1000 genomes]
rs948963	0.84[EUR][1000 genomes]
rs948970	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
2	chr11:76880200-76887600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
4	chr11:76881200-76888000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:76882400-76886800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:76882400-76888000	Enhancers	Fetal Muscle Leg	muscle
7	chr11:76882800-76887600	Enhancers	Spleen	Spleen
8	chr11:76883200-76889200	Weak transcription	Gastric	stomach
9	chr11:76883400-76887800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:76883400-76889800	Weak transcription	Ovary	ovary
11	chr11:76883800-76887600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
13	chr11:76884000-76886800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:76884000-76888200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:76884200-76887000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:76884800-76886800	Weak transcription	Right Ventricle	heart
17	chr11:76885000-76887600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:76885200-76886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76885200-76886800	Weak transcription	Fetal Stomach	stomach
20	chr11:76885200-76896000	Strong transcription	Fetal Intestine Large	intestine
21	chr11:76885400-76886800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:76885400-76887600	Enhancers	HSMM	muscle
23	chr11:76885400-76887800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr11:76885400-76887800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:76885400-76887800	Enhancers	HSMMtube	muscle
26	chr11:76885400-76896000	Strong transcription	Fetal Intestine Small	intestine
27	chr11:76885600-76887600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:76885600-76887800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:76885600-76890000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:76885800-76886800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:76885800-76886800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:76885800-76887600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr11:76885800-76889800	Weak transcription	HepG2	liver
34	chr11:76886000-76886800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:76886000-76886800	Weak transcription	Lung	lung
36	chr11:76886000-76887800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr11:76886000-76888000	Enhancers	Primary hematopoietic stem cells	blood
38	chr11:76886000-76894600	Weak transcription	Brain Substantia Nigra	brain
39	chr11:76886200-76887000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr11:76886200-76887000	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr11:76886200-76887200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:76886200-76887400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:76886200-76887600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr11:76886200-76887600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:76886200-76887800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:76886200-76887800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:76886200-76887800	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:76886200-76888400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:76886400-76886800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:76886400-76886800	Active TSS	Brain Anterior Caudate	brain

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