Variant report

Variant	rs948963
Chromosome Location	chr11:76914696-76914697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10466706	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10466707	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793239	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs10899356	0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs10899357	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899358	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899359	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899360	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899362	0.81[ASN][1000 genomes]
rs1109162	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1109163	0.83[EUR][1000 genomes]
rs1109977	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237106	0.84[EUR][1000 genomes]
rs11237109	0.91[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237110	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237111	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237118	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11237119	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11237120	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237121	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237122	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12421897	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577334	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs12577724	0.84[EUR][1000 genomes]
rs12792197	0.90[EUR][1000 genomes]
rs12802853	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12806868	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1320702	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1320703	0.81[ASN][1000 genomes]
rs1944034	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2076968	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2077198	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2155179	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2186659	0.90[EUR][1000 genomes]
rs2276283	0.82[EUR][1000 genomes]
rs2276285	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2276286	0.95[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs2276287	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2276288	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276290	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2276291	0.81[ASN][1000 genomes]
rs2276293	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2276294	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740762	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs3781689	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781690	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781693	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781694	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs3781695	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs4944148	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4945155	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4945157	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945158	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945159	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945160	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56251502	0.83[ASN][1000 genomes]
rs7117606	0.82[EUR][1000 genomes]
rs7122023	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7123925	0.82[JPT][hapmap]
rs7481443	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7927472	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932992	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933106	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7942355	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943136	0.85[EUR][1000 genomes]
rs7947922	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952285	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs867505	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs867507	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs867508	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs885440	0.81[ASN][1000 genomes]
rs885441	0.81[ASN][1000 genomes]
rs885442	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs948958	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs948960	0.81[ASN][1000 genomes]
rs948961	0.81[ASN][1000 genomes]
rs948970	0.81[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv897936	chr11:76900813-76935002	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76890800-76918400	Weak transcription	Ovary	ovary
3	chr11:76899800-76928200	Strong transcription	Liver	Liver
4	chr11:76903600-76928000	Weak transcription	Colonic Mucosa	Colon
5	chr11:76903600-76928600	Strong transcription	Fetal Intestine Small	intestine
6	chr11:76904200-76927600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:76904600-76915600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:76904600-76927800	Strong transcription	Fetal Intestine Large	intestine
9	chr11:76906600-76915600	Weak transcription	Right Ventricle	heart
10	chr11:76907000-76918800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:76908400-76922400	Weak transcription	Gastric	stomach
12	chr11:76908400-76928200	Strong transcription	Spleen	Spleen
13	chr11:76910000-76914800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:76912200-76917600	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:76912200-76917800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:76913400-76918800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:76913600-76917000	Weak transcription	Placenta	Placenta
18	chr11:76914000-76916800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:76914200-76914800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:76914200-76915000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:76914400-76914800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:76914400-76916600	Strong transcription	Pancreas	Pancrea
23	chr11:76914400-76924600	Weak transcription	Primary monocytes fromperipheralblood	blood

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