Variant report

Variant	rs7117606
Chromosome Location	chr11:76892943-76892944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76831891..76834219-chr11:76892842..76895581,2	MCF-7	breast:
2	chr11:76888342..76890905-chr11:76892129..76894911,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137474	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10466706	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10466707	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10793239	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899356	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899357	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899358	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899359	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899360	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1109162	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1109163	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1109977	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11237106	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11237109	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11237110	0.82[EUR][1000 genomes]
rs11237118	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11237119	0.82[EUR][1000 genomes]
rs11237121	0.81[EUR][1000 genomes]
rs12421897	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12577334	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12577724	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12792197	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12802853	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12806868	0.82[EUR][1000 genomes]
rs1944034	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076968	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2077198	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155179	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2186659	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276283	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2276285	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2276286	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2276287	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276288	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2276294	0.81[EUR][1000 genomes]
rs3740762	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781690	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3781694	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3781695	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944148	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945155	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945157	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4945158	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4945160	0.81[EUR][1000 genomes]
rs7122023	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7481443	0.82[EUR][1000 genomes]
rs7932992	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933106	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7942355	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7943136	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7947922	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7952285	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs867505	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs867507	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs867508	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs948958	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs948963	0.82[EUR][1000 genomes]
rs948970	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
3	chr11:76885200-76896000	Strong transcription	Fetal Intestine Large	intestine
4	chr11:76885400-76896000	Strong transcription	Fetal Intestine Small	intestine
5	chr11:76886000-76894600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:76887000-76895000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:76887800-76894000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76887800-76899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:76888200-76893400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:76888200-76894000	Strong transcription	Spleen	Spleen
13	chr11:76888600-76896000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:76889200-76894600	Strong transcription	Pancreas	Pancrea
15	chr11:76890600-76893400	Weak transcription	Right Ventricle	heart
16	chr11:76890800-76893000	Strong transcription	Fetal Stomach	stomach
17	chr11:76890800-76918400	Weak transcription	Ovary	ovary
18	chr11:76891000-76894200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
20	chr11:76891400-76894800	Strong transcription	Placenta	Placenta
21	chr11:76891400-76899200	Strong transcription	Liver	Liver
22	chr11:76891600-76893000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:76891800-76894200	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:76892200-76894000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:76892400-76893600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:76892600-76893000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links