Variant report

Variant	rs2186659
Chromosome Location	chr11:76900078-76900079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76837378..76839698-chr11:76898309..76901190,60	MCF-7	breast:
2	chr11:76824265..76824810-chr11:76899182..76900109,2	K562	blood:
3	chr11:76837980..76839429-chr11:76899070..76900085,11	MCF-7	breast:
4	chr11:76757775..76758703-chr11:76899099..76900080,6	MCF-7	breast:
5	chr11:76875143..76875901-chr11:76899514..76900189,2	K562	blood:
6	chr11:76835516..76838692-chr11:76899720..76903376,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137474	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10466706	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10466707	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793239	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10899356	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899357	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899358	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899359	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899360	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1109162	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1109163	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1109977	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237106	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237110	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237111	0.87[EUR][1000 genomes]
rs11237118	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11237119	0.90[EUR][1000 genomes]
rs11237120	0.86[EUR][1000 genomes]
rs11237121	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12421897	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12577334	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577724	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12792197	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802853	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12806868	0.90[EUR][1000 genomes]
rs1944034	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2076968	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2077198	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2155179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276283	0.92[EUR][1000 genomes]
rs2276285	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276286	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276287	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276288	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2276294	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3740762	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781689	0.85[EUR][1000 genomes]
rs3781690	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3781691	0.85[EUR][1000 genomes]
rs3781693	0.85[EUR][1000 genomes]
rs3781694	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781695	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944148	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945155	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945157	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945158	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945159	0.85[EUR][1000 genomes]
rs4945160	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7117606	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7122023	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7481443	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927472	0.85[EUR][1000 genomes]
rs7932992	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7933106	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7942355	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943136	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7947922	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952285	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867505	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs867507	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs867508	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs948958	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs948963	0.90[EUR][1000 genomes]
rs948970	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:76890800-76918400	Weak transcription	Ovary	ovary
5	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76893800-76903800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:76894000-76900400	Weak transcription	Spleen	Spleen
8	chr11:76894000-76901600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:76894400-76903800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:76894400-76903800	Weak transcription	Gastric	stomach
11	chr11:76894600-76902600	Weak transcription	Pancreas	Pancrea
12	chr11:76894800-76900600	Weak transcription	Placenta	Placenta
13	chr11:76895600-76903800	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76897400-76900400	Enhancers	Fetal Intestine Large	intestine
15	chr11:76898000-76900800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:76898200-76900200	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:76898200-76900600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr11:76898400-76901200	Genic enhancers	Fetal Intestine Small	intestine
19	chr11:76899200-76901000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:76899600-76900400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:76899600-76900400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:76899600-76900400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:76899600-76903800	Weak transcription	HepG2	liver
24	chr11:76899800-76900400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:76899800-76900600	Enhancers	Colonic Mucosa	Colon
26	chr11:76899800-76901200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr11:76899800-76902600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76899800-76928200	Strong transcription	Liver	Liver
29	chr11:76900000-76901400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:76900000-76902000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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