Variant report

Variant	rs12577724
Chromosome Location	chr11:76889080-76889081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10466706	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10466707	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793239	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899356	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899357	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899358	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899359	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899360	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1109162	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1109163	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1109977	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11237106	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11237109	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11237110	0.83[EUR][1000 genomes]
rs11237111	0.82[EUR][1000 genomes]
rs11237118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11237119	0.83[EUR][1000 genomes]
rs11237120	0.80[EUR][1000 genomes]
rs11237121	0.82[EUR][1000 genomes]
rs12421897	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12577334	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12792197	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12802853	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12806868	0.83[EUR][1000 genomes]
rs1944034	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076968	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077198	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155179	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2186659	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2276283	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276285	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276287	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276288	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2276294	0.83[EUR][1000 genomes]
rs3740762	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781690	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3781694	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781695	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944148	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945155	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945157	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4945158	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4945160	0.82[EUR][1000 genomes]
rs7117606	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122023	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7481443	0.83[EUR][1000 genomes]
rs7932992	0.84[EUR][1000 genomes]
rs7933106	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7942355	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7943136	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7947922	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7952285	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs867505	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs867507	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs867508	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs948958	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs948963	0.84[EUR][1000 genomes]
rs948970	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
2	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
3	chr11:76883200-76889200	Weak transcription	Gastric	stomach
4	chr11:76883400-76889800	Weak transcription	Ovary	ovary
5	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
6	chr11:76885200-76896000	Strong transcription	Fetal Intestine Large	intestine
7	chr11:76885400-76896000	Strong transcription	Fetal Intestine Small	intestine
8	chr11:76885600-76890000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:76885800-76889800	Weak transcription	HepG2	liver
10	chr11:76886000-76894600	Weak transcription	Brain Substantia Nigra	brain
11	chr11:76887000-76895000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:76887400-76890000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:76887400-76890000	Weak transcription	Right Ventricle	heart
14	chr11:76887400-76891600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:76887600-76891600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:76887800-76890000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:76887800-76890000	Weak transcription	HSMMtube	muscle
19	chr11:76887800-76894000	Weak transcription	Brain Anterior Caudate	brain
20	chr11:76887800-76899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:76888000-76890000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:76888000-76890000	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:76888200-76889400	Strong transcription	Liver	Liver
25	chr11:76888200-76893400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:76888200-76894000	Strong transcription	Spleen	Spleen
27	chr11:76888400-76890800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76888600-76889600	Weak transcription	Adipose Nuclei	Adipose
29	chr11:76888600-76890000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:76888600-76896000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:76889000-76890000	Strong transcription	Placenta	Placenta
32	chr11:76889000-76890200	Strong transcription	Primary monocytes fromperipheralblood	blood

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