Variant report

Variant	rs11238748
Chromosome Location	chr10:44361608-44361609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1008804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751346	0.83[ASN][1000 genomes]
rs1078113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547163	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1578854	0.85[EUR][1000 genomes]
rs61859386	0.82[ASN][1000 genomes]
rs7070116	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7901526	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs7920511	0.87[ASN][1000 genomes]
rs7921870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921967	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238748	ZNF239	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
2	chr10:44358400-44362200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:44359200-44361800	Enhancers	Fetal Heart	heart
4	chr10:44359800-44366400	Weak transcription	Lung	lung
5	chr10:44360000-44362200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44360000-44362400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44360000-44362400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:44360000-44362600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44360000-44362800	Weak transcription	Osteobl	bone
10	chr10:44360000-44363000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:44360000-44363600	Enhancers	HepG2	liver
12	chr10:44360000-44363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:44360200-44362800	Weak transcription	HSMM	muscle
15	chr10:44360200-44363800	Weak transcription	Hela-S3	cervix
16	chr10:44360400-44362400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:44360400-44362600	Weak transcription	NHLF	lung
18	chr10:44360400-44366400	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:44360600-44362400	Weak transcription	Adipose Nuclei	Adipose
20	chr10:44361000-44362400	Weak transcription	HUVEC	blood vessel
21	chr10:44361000-44362600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:44361200-44362200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:44361200-44362200	Weak transcription	NHDF-Ad	bronchial
24	chr10:44361200-44362800	Weak transcription	Fetal Kidney	kidney
25	chr10:44361200-44362800	Weak transcription	Fetal Lung	lung
26	chr10:44361200-44363200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:44361200-44365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:44361400-44363000	Weak transcription	Fetal Stomach	stomach
29	chr10:44361400-44363200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:44361400-44363800	Weak transcription	Ovary	ovary
31	chr10:44361400-44365600	Weak transcription	Spleen	Spleen
32	chr10:44361600-44362600	Weak transcription	Right Atrium	heart
33	chr10:44361600-44363800	Weak transcription	Right Ventricle	heart

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