Variant report

Variant	rs7921870
Chromosome Location	chr10:44362711-44362712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-1	chr10:44362704-44362787	XLOC_008473
2	lnc-C10orf136-1	chr10:44362605-44362787	XLOC_008473
3	lnc-C10orf136-1	chr10:44362703-44362787	NONHSAT013001

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1008804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751346	0.83[ASN][1000 genomes]
rs1078113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547163	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1578854	0.85[EUR][1000 genomes]
rs61859386	0.82[ASN][1000 genomes]
rs7070116	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7920511	0.87[ASN][1000 genomes]
rs7921967	0.82[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
2	chr10:44359800-44366400	Weak transcription	Lung	lung
3	chr10:44360000-44362800	Weak transcription	Osteobl	bone
4	chr10:44360000-44363000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:44360000-44363600	Enhancers	HepG2	liver
6	chr10:44360000-44363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44360200-44362800	Weak transcription	HSMM	muscle
9	chr10:44360200-44363800	Weak transcription	Hela-S3	cervix
10	chr10:44360400-44366400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:44361200-44362800	Weak transcription	Fetal Kidney	kidney
12	chr10:44361200-44362800	Weak transcription	Fetal Lung	lung
13	chr10:44361200-44363200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:44361200-44365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:44361400-44363000	Weak transcription	Fetal Stomach	stomach
16	chr10:44361400-44363200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:44361400-44363800	Weak transcription	Ovary	ovary
18	chr10:44361400-44365600	Weak transcription	Spleen	Spleen
19	chr10:44361600-44363800	Weak transcription	Right Ventricle	heart
20	chr10:44361800-44373000	Weak transcription	Fetal Heart	heart
21	chr10:44362200-44363800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:44362200-44365000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:44362200-44365400	Enhancers	NHDF-Ad	bronchial
24	chr10:44362400-44363800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:44362400-44364000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:44362400-44364400	Enhancers	Adipose Nuclei	Adipose
27	chr10:44362400-44364400	Enhancers	HUVEC	blood vessel
28	chr10:44362400-44365000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:44362600-44363000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:44362600-44363800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:44362600-44364000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:44362600-44364200	Enhancers	NHLF	lung
33	chr10:44362600-44365000	Enhancers	Right Atrium	heart

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