Variant report

Variant	rs7070116
Chromosome Location	chr10:44370167-44370168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1008804	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751346	0.83[ASN][1000 genomes]
rs1078113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899924	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238748	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238755	0.80[EUR][1000 genomes]
rs1547163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578854	0.86[EUR][1000 genomes]
rs61859386	0.81[ASN][1000 genomes]
rs7901526	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs7920511	0.87[ASN][1000 genomes]
rs7921870	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7921967	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7070116	ZNF239	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44361800-44373000	Weak transcription	Fetal Heart	heart
3	chr10:44364200-44374000	Weak transcription	NHLF	lung
4	chr10:44365000-44373400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44365000-44373400	Weak transcription	Right Ventricle	heart
6	chr10:44365400-44371400	Weak transcription	NHDF-Ad	bronchial
7	chr10:44366800-44371400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:44367200-44373200	Weak transcription	Left Ventricle	heart
9	chr10:44367200-44373200	Weak transcription	Right Atrium	heart
10	chr10:44367200-44373200	Weak transcription	Spleen	Spleen
11	chr10:44367400-44373600	Weak transcription	Fetal Stomach	stomach
12	chr10:44368400-44373600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:44368400-44377200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links