Variant report

Variant	rs11241785
Chromosome Location	chr5:124446052-124446053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11950458	0.93[ASN][1000 genomes]
rs11953289	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11956003	0.93[ASN][1000 genomes]
rs11956633	0.89[ASN][1000 genomes]
rs12520910	0.93[ASN][1000 genomes]
rs12655216	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13157128	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4076183	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4076184	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4076185	0.93[ASN][1000 genomes]
rs4131047	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4415071	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4452554	0.87[ASN][1000 genomes]
rs4554218	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4555796	0.82[JPT][hapmap]
rs4643951	0.93[ASN][1000 genomes]
rs4835863	0.91[ASN][1000 genomes]
rs59246326	0.95[ASN][1000 genomes]
rs6595575	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6870629	0.93[ASN][1000 genomes]
rs6872841	0.82[JPT][hapmap]
rs72787451	0.89[ASN][1000 genomes]
rs7445665	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7709124	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7724511	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs875330	0.93[ASN][1000 genomes]
rs875331	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875332	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs968327	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124439600-124446600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:124443200-124447800	Weak transcription	NHDF-Ad	bronchial
3	chr5:124445000-124446200	Enhancers	Fetal Brain Male	brain
4	chr5:124445000-124446200	Enhancers	Fetal Brain Female	brain
5	chr5:124445400-124449200	Enhancers	Dnd41	blood
6	chr5:124445800-124446200	Enhancers	Fetal Stomach	stomach
7	chr5:124445800-124455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:124446000-124446200	Enhancers	Aorta	Aorta

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