Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11241785	0.93[ASN][1000 genomes]
rs11953289	0.89[ASN][1000 genomes]
rs11956003	0.87[ASN][1000 genomes]
rs11956633	0.95[ASN][1000 genomes]
rs12520910	0.91[ASN][1000 genomes]
rs12655216	0.85[ASN][1000 genomes]
rs13157128	0.89[ASN][1000 genomes]
rs4076183	0.89[ASN][1000 genomes]
rs4076184	0.89[ASN][1000 genomes]
rs4076185	0.87[ASN][1000 genomes]
rs4131047	0.93[ASN][1000 genomes]
rs4293913	0.83[ASN][1000 genomes]
rs4415071	0.93[ASN][1000 genomes]
rs4451044	0.80[ASN][1000 genomes]
rs4452554	0.85[ASN][1000 genomes]
rs4510579	0.80[ASN][1000 genomes]
rs4554218	0.89[ASN][1000 genomes]
rs4643951	0.91[ASN][1000 genomes]
rs4835863	0.98[ASN][1000 genomes]
rs55919034	0.80[ASN][1000 genomes]
rs59246326	0.93[ASN][1000 genomes]
rs6595573	0.83[ASN][1000 genomes]
rs6595575	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870629	0.87[ASN][1000 genomes]
rs72787451	0.95[ASN][1000 genomes]
rs7445665	0.93[ASN][1000 genomes]
rs7709124	0.95[ASN][1000 genomes]
rs7724511	0.95[ASN][1000 genomes]
rs875330	0.87[ASN][1000 genomes]
rs875331	0.89[ASN][1000 genomes]
rs875332	0.89[ASN][1000 genomes]
rs968327	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019740	chr5:124394818-124431220	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124420000-124428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:124420000-124429000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124420200-124429400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:124422200-124428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:124424200-124424600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:124424200-124424600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:124424400-124430000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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