Variant report

Variant	rs4554218
Chromosome Location	chr5:124449616-124449617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124441238..124443626-chr5:124448312..124451103,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11241785	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11950458	0.89[ASN][1000 genomes]
rs11953289	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956003	0.98[ASN][1000 genomes]
rs11956633	0.85[ASN][1000 genomes]
rs12520910	0.89[ASN][1000 genomes]
rs12655216	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13157128	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076183	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076184	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076185	0.98[ASN][1000 genomes]
rs4131047	0.83[CEU][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4415071	0.83[CEU][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4452554	0.83[ASN][1000 genomes]
rs4643951	0.89[ASN][1000 genomes]
rs4835863	0.87[ASN][1000 genomes]
rs59246326	0.91[ASN][1000 genomes]
rs6595575	0.89[ASN][1000 genomes]
rs6870629	0.98[ASN][1000 genomes]
rs72787451	0.85[ASN][1000 genomes]
rs7445665	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7709124	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7724511	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs875330	0.98[ASN][1000 genomes]
rs875331	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875332	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968327	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124445800-124455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:124447800-124449800	Enhancers	NHDF-Ad	bronchial
3	chr5:124448200-124450800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:124448200-124453000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:124448200-124453000	Weak transcription	NHLF	lung
6	chr5:124448400-124453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:124449200-124454000	Weak transcription	Dnd41	blood
8	chr5:124449600-124450800	Weak transcription	HSMM	muscle

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