Variant report
| Variant | rs59246326 |
|---|---|
| Chromosome Location | chr5:124441837-124441838 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:124441238..124443626-chr5:124448312..124451103,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249365 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11241785 | 0.95[ASN][1000 genomes] |
| rs11950458 | 0.93[ASN][1000 genomes] |
| rs11953289 | 0.91[ASN][1000 genomes] |
| rs11956003 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11956633 | 0.93[ASN][1000 genomes] |
| rs12520910 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12655216 | 0.87[ASN][1000 genomes] |
| rs13157128 | 0.91[ASN][1000 genomes] |
| rs4076183 | 0.91[ASN][1000 genomes] |
| rs4076184 | 0.91[ASN][1000 genomes] |
| rs4076185 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4131047 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4415071 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4452554 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4554218 | 0.91[ASN][1000 genomes] |
| rs4643951 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4835863 | 0.95[ASN][1000 genomes] |
| rs6595575 | 0.93[ASN][1000 genomes] |
| rs6870629 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72787451 | 0.93[ASN][1000 genomes] |
| rs7445665 | 0.95[ASN][1000 genomes] |
| rs7709124 | 0.98[ASN][1000 genomes] |
| rs7724511 | 0.98[ASN][1000 genomes] |
| rs875330 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs875331 | 0.91[ASN][1000 genomes] |
| rs875332 | 0.91[ASN][1000 genomes] |
| rs968327 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882822 | chr5:124250018-124449375 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830475 | chr5:124387292-124550256 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:124437000-124442000 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr5:124439600-124446600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
