Variant report

Variant	rs11956003
Chromosome Location	chr5:124453207-124453208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11241785	0.93[ASN][1000 genomes]
rs11950458	0.87[ASN][1000 genomes]
rs11953289	0.98[ASN][1000 genomes]
rs11956633	0.87[ASN][1000 genomes]
rs12520910	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655216	0.94[ASN][1000 genomes]
rs13157128	0.98[ASN][1000 genomes]
rs4076183	0.98[ASN][1000 genomes]
rs4076184	0.98[ASN][1000 genomes]
rs4076185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4415071	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4452554	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4554218	0.98[ASN][1000 genomes]
rs4643951	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4835863	0.89[ASN][1000 genomes]
rs59246326	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6595575	0.87[ASN][1000 genomes]
rs6870629	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787451	0.87[ASN][1000 genomes]
rs7445665	0.89[ASN][1000 genomes]
rs7709124	0.91[ASN][1000 genomes]
rs7724511	0.91[ASN][1000 genomes]
rs875330	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875331	0.98[ASN][1000 genomes]
rs875332	0.98[ASN][1000 genomes]
rs968327	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124445800-124455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:124448400-124453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:124449200-124454000	Weak transcription	Dnd41	blood
4	chr5:124451600-124454800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:124452800-124454000	Enhancers	Fetal Brain Female	brain
6	chr5:124453000-124454000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:124453000-124454000	Enhancers	NHLF	lung
8	chr5:124453000-124454200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:124453000-124454200	Enhancers	HSMM	muscle
10	chr5:124453000-124454200	Enhancers	HSMMtube	muscle
11	chr5:124453000-124454200	Enhancers	NHDF-Ad	bronchial
12	chr5:124453200-124453600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:124453200-124453800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:124453200-124453800	Enhancers	Fetal Brain Male	brain

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