Variant report

Variant	rs11252277
Chromosome Location	chr10:4065704-4065705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508272	1.00[ASW][hapmap];0.85[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.92[LWK][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11252236	1.00[ASW][hapmap];0.85[CEU][hapmap];0.81[GIH][hapmap]
rs11252237	0.85[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs12217249	0.85[CEU][hapmap]
rs12217980	1.00[ASW][hapmap]
rs17131877	0.82[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2031575	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs67401362	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7092266	0.82[CEU][hapmap]
rs72774752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72774753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7903823	0.85[CEU][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4056200-4066800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial
3	chr10:4064200-4067000	Weak transcription	Right Ventricle	heart
4	chr10:4065000-4068200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:4065400-4065800	Enhancers	Dnd41	blood
6	chr10:4065600-4066400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:4065600-4067400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:4065600-4067600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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