Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4032476..4035285-chr10:4060007..4062185,2	K562	blood:
2	chr10:3827101..3828753-chr10:4060844..4063751,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508272	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10751952	0.93[ASN][1000 genomes]
rs11252230	0.83[EUR][1000 genomes]
rs11252235	0.89[EUR][1000 genomes]
rs11252236	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11252237	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11252277	0.82[CEU][hapmap]
rs11814797	0.83[EUR][1000 genomes]
rs12217249	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12217258	0.82[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1570947	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17131877	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17136237	0.87[EUR][1000 genomes]
rs2031575	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2397398	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2645215	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56142939	0.87[EUR][1000 genomes]
rs56250932	0.82[EUR][1000 genomes]
rs57872033	0.82[EUR][1000 genomes]
rs61519757	0.89[EUR][1000 genomes]
rs67401362	0.94[EUR][1000 genomes]
rs7098287	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72774717	0.82[EUR][1000 genomes]
rs72774728	0.89[EUR][1000 genomes]
rs72774752	0.85[EUR][1000 genomes]
rs7903823	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs943017	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4056200-4066800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial
3	chr10:4057200-4063800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:4058000-4062200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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