Variant report

Variant	rs2397398
Chromosome Location	chr10:4053441-4053442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508272	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10751952	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11252230	0.87[EUR][1000 genomes]
rs11252235	0.92[EUR][1000 genomes]
rs11252236	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11252237	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11252277	0.85[CEU][hapmap]
rs11814797	0.87[EUR][1000 genomes]
rs12217249	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12217258	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs1570947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131877	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17136237	0.91[EUR][1000 genomes]
rs2031575	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645215	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56142939	0.91[EUR][1000 genomes]
rs56250932	0.85[EUR][1000 genomes]
rs57872033	0.85[EUR][1000 genomes]
rs61519757	0.92[EUR][1000 genomes]
rs67401362	0.98[EUR][1000 genomes]
rs7092266	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7098287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774717	0.85[EUR][1000 genomes]
rs72774723	0.82[EUR][1000 genomes]
rs72774728	0.92[EUR][1000 genomes]
rs72774752	0.82[EUR][1000 genomes]
rs7903823	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs943017	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762838	chr10:4048172-4054844	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4051800-4055800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4052000-4054400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:4052200-4056000	Weak transcription	Fetal Heart	heart
7	chr10:4052600-4056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:4053200-4053600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:4053200-4053600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:4053200-4053600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:4053200-4053600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:4053200-4053600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:4053200-4053600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:4053200-4053600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:4053400-4053600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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