Variant report

Variant	rs2031575
Chromosome Location	chr10:4050058-4050059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4033038..4035394-chr10:4049800..4051958,2	MCF-7	breast:
2	chr10:3826897..3830024-chr10:4047039..4050070,3	MCF-7	breast:
3	chr10:3828808..3830704-chr10:4048234..4051137,2	K562	blood:
4	chr10:4044243..4046356-chr10:4047732..4050540,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508272	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs10751952	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11252230	0.87[EUR][1000 genomes]
rs11252235	0.92[EUR][1000 genomes]
rs11252236	1.00[CEU][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs11252237	1.00[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs11252277	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs11814797	0.87[EUR][1000 genomes]
rs12217249	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12217258	0.85[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs12217980	0.91[TSI][hapmap]
rs1570947	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131877	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17136237	0.91[EUR][1000 genomes]
rs2397398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645215	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56142939	0.91[EUR][1000 genomes]
rs56250932	0.85[EUR][1000 genomes]
rs57872033	0.85[EUR][1000 genomes]
rs61519757	0.92[EUR][1000 genomes]
rs67401362	0.98[EUR][1000 genomes]
rs7092266	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7098287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774717	0.85[EUR][1000 genomes]
rs72774723	0.82[EUR][1000 genomes]
rs72774728	0.92[EUR][1000 genomes]
rs72774752	0.82[EUR][1000 genomes]
rs7903823	1.00[CEU][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs943017	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2762838	chr10:4048172-4054844	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4051800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
4	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:4047800-4050200	Enhancers	Placenta	Placenta
6	chr10:4049400-4051600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:4049800-4050200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:4049800-4051000	Weak transcription	Fetal Heart	heart

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