Variant report

Variant	rs10508272
Chromosome Location	chr10:4056871-4056872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826838..3829190-chr10:4056684..4059245,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10904150	0.81[EUR][1000 genomes]
rs11252230	0.89[EUR][1000 genomes]
rs11252235	0.91[EUR][1000 genomes]
rs11252236	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11252237	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs11252277	1.00[ASW][hapmap];0.85[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.92[LWK][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11814797	0.89[EUR][1000 genomes]
rs12217249	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12217258	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12217980	1.00[ASW][hapmap];0.91[TSI][hapmap]
rs1570947	0.98[EUR][1000 genomes]
rs17131877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17136228	1.00[MEX][hapmap]
rs17136237	0.92[EUR][1000 genomes]
rs2031575	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2397398	0.98[EUR][1000 genomes]
rs2645215	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56142939	0.92[EUR][1000 genomes]
rs56250932	0.87[EUR][1000 genomes]
rs57872033	0.87[EUR][1000 genomes]
rs61519757	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67401362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092266	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7098287	0.98[EUR][1000 genomes]
rs72774717	0.87[EUR][1000 genomes]
rs72774723	0.84[EUR][1000 genomes]
rs72774728	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72774752	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72774753	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7903823	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs943017	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9664331	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407996	chr10:4054377-4056925	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:4055800-4057400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:4056000-4057200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:4056200-4057000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:4056200-4057200	Enhancers	HSMMtube	muscle
6	chr10:4056200-4059400	Weak transcription	Right Atrium	heart
7	chr10:4056200-4060400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:4056200-4066800	Weak transcription	Adipose Nuclei	Adipose
9	chr10:4056600-4060200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial

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