Variant report

Variant	rs9664331
Chromosome Location	chr10:4038347-4038348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508272	0.85[CHD][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs11252236	0.83[TSI][hapmap]
rs11252277	0.81[JPT][hapmap]
rs17131877	0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs61519757	0.99[ASN][1000 genomes]
rs67401362	0.92[ASN][1000 genomes]
rs72774728	0.97[ASN][1000 genomes]
rs72774752	0.89[ASN][1000 genomes]
rs7903823	0.83[TSI][hapmap]
rs943017	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4036800-4038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4037000-4038600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:4037200-4038400	Enhancers	NHDF-Ad	bronchial
5	chr10:4037400-4038400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4037400-4038600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:4037600-4038400	Enhancers	HSMM	muscle
8	chr10:4037600-4038400	Enhancers	HUVEC	blood vessel
9	chr10:4037600-4038600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:4037600-4038600	Enhancers	HMEC	breast
11	chr10:4037600-4038600	Enhancers	NHEK	skin
12	chr10:4037600-4038600	Enhancers	Osteobl	bone
13	chr10:4037800-4039800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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