Variant report

Variant	rs943017
Chromosome Location	chr10:4039747-4039748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4033984..4038584-chr10:4038783..4042645,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508272	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904150	0.86[EUR][1000 genomes]
rs11252230	0.94[EUR][1000 genomes]
rs11252235	0.96[EUR][1000 genomes]
rs11252236	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs11252237	1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs11252277	0.85[CEU][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap]
rs11814797	0.91[EUR][1000 genomes]
rs12217249	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12217258	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs12217980	0.95[TSI][hapmap]
rs1570947	0.92[EUR][1000 genomes]
rs17131877	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17136228	1.00[MEX][hapmap]
rs17136237	0.98[EUR][1000 genomes]
rs2031575	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2397398	0.92[EUR][1000 genomes]
rs2645215	0.89[EUR][1000 genomes]
rs56142939	0.98[EUR][1000 genomes]
rs56250932	0.92[EUR][1000 genomes]
rs57872033	0.92[EUR][1000 genomes]
rs61519757	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67401362	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076596	0.87[ASW][hapmap]
rs7092266	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7098287	0.92[EUR][1000 genomes]
rs72774717	0.92[EUR][1000 genomes]
rs72774723	0.89[EUR][1000 genomes]
rs72774728	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72774752	0.92[ASN][1000 genomes]
rs7903823	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9664331	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4037800-4039800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:4038600-4042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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