Variant report

Variant	rs67401362
Chromosome Location	chr10:4056174-4056175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904150	0.81[EUR][1000 genomes]
rs11252230	0.89[EUR][1000 genomes]
rs11252235	0.91[EUR][1000 genomes]
rs11252236	0.92[EUR][1000 genomes]
rs11252237	0.87[EUR][1000 genomes]
rs11252277	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11814797	0.89[EUR][1000 genomes]
rs12217249	0.92[EUR][1000 genomes]
rs12217258	0.91[EUR][1000 genomes]
rs1570947	0.98[EUR][1000 genomes]
rs17131877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17136237	0.92[EUR][1000 genomes]
rs2031575	0.98[EUR][1000 genomes]
rs2397398	0.98[EUR][1000 genomes]
rs2645215	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56142939	0.92[EUR][1000 genomes]
rs56250932	0.87[EUR][1000 genomes]
rs57872033	0.87[EUR][1000 genomes]
rs61519757	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092266	0.94[EUR][1000 genomes]
rs7098287	0.98[EUR][1000 genomes]
rs72774717	0.87[EUR][1000 genomes]
rs72774723	0.84[EUR][1000 genomes]
rs72774728	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72774752	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72774753	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7903823	0.92[EUR][1000 genomes]
rs943017	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9664331	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407996	chr10:4054377-4056925	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:4054800-4056400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:4055000-4056200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:4055000-4056600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:4055200-4056200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:4055600-4056200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:4055600-4056200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:4055600-4056400	Enhancers	NHEK	skin
9	chr10:4055800-4056200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:4055800-4056200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:4055800-4056200	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:4055800-4056200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:4055800-4056200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:4055800-4056200	Enhancers	Adipose Nuclei	Adipose
15	chr10:4055800-4056200	Flanking Active TSS	Esophagus	oesophagus
16	chr10:4055800-4056200	Enhancers	Left Ventricle	heart
17	chr10:4055800-4056200	Enhancers	Lung	lung
18	chr10:4055800-4056200	Enhancers	Psoas Muscle	Psoas
19	chr10:4055800-4056200	Enhancers	Right Atrium	heart
20	chr10:4055800-4056200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr10:4055800-4056200	Flanking Active TSS	GM12878-XiMat	blood
22	chr10:4055800-4056200	Flanking Active TSS	HSMM	muscle
23	chr10:4055800-4056400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:4055800-4056400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:4055800-4056400	Enhancers	Brain Hippocampus Middle	brain
26	chr10:4055800-4056400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:4055800-4056600	Enhancers	Fetal Muscle Leg	muscle
28	chr10:4055800-4057400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:4056000-4056400	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:4056000-4056400	Enhancers	Stomach Smooth Muscle	stomach
31	chr10:4056000-4056600	Enhancers	Fetal Heart	heart
32	chr10:4056000-4056800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:4056000-4057200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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