Variant report

Variant	rs11252407
Chromosome Location	chr10:4298630-4298631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11252427	1.00[EUR][1000 genomes]
rs11252428	1.00[EUR][1000 genomes]
rs11815588	1.00[EUR][1000 genomes]
rs11819395	1.00[EUR][1000 genomes]
rs12246351	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12250485	1.00[EUR][1000 genomes]
rs12266164	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1616203	1.00[EUR][1000 genomes]
rs1679445	1.00[EUR][1000 genomes]
rs1679453	1.00[EUR][1000 genomes]
rs1923398	1.00[EUR][1000 genomes]
rs4142671	1.00[EUR][1000 genomes]
rs55880712	1.00[EUR][1000 genomes]
rs60543757	1.00[EUR][1000 genomes]
rs7087506	1.00[EUR][1000 genomes]
rs7097687	1.00[EUR][1000 genomes]
rs7098580	1.00[EUR][1000 genomes]
rs73590778	1.00[EUR][1000 genomes]
rs73590779	1.00[EUR][1000 genomes]
rs73590787	1.00[EUR][1000 genomes]
rs73590789	1.00[EUR][1000 genomes]
rs73592723	1.00[EUR][1000 genomes]
rs74114737	1.00[EUR][1000 genomes]
rs7903376	1.00[EUR][1000 genomes]
rs7913017	1.00[EUR][1000 genomes]
rs7919733	1.00[EUR][1000 genomes]
rs7920841	1.00[EUR][1000 genomes]
rs7924147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1050694	chr10:4290802-4306798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4289400-4301400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:4292800-4301800	Weak transcription	Hela-S3	cervix
3	chr10:4296800-4300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:4296800-4302200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:4296800-4308800	Weak transcription	Psoas Muscle	Psoas
6	chr10:4297000-4302000	Weak transcription	Osteobl	bone
7	chr10:4297000-4302200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:4297000-4302200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4297000-4302200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:4297600-4299200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:4297600-4302200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:4297800-4299400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:4298200-4298800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:4298200-4299200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4298200-4305800	Weak transcription	Aorta	Aorta
16	chr10:4298400-4302200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:4298400-4302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:4298600-4298800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:4298600-4300000	Weak transcription	NHDF-Ad	bronchial
20	chr10:4298600-4302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:4298600-4302400	Weak transcription	NHEK	skin

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