Variant report

Variant	rs1923398
Chromosome Location	chr10:4325791-4325792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4324123..4326920-chr10:4330780..4332390,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11252407	1.00[EUR][1000 genomes]
rs11252427	1.00[EUR][1000 genomes]
rs11252428	1.00[EUR][1000 genomes]
rs11815588	1.00[EUR][1000 genomes]
rs11819395	1.00[EUR][1000 genomes]
rs12246351	1.00[EUR][1000 genomes]
rs12250485	1.00[EUR][1000 genomes]
rs12266164	1.00[EUR][1000 genomes]
rs1570294	0.83[ASN][1000 genomes]
rs1616203	1.00[EUR][1000 genomes]
rs1679445	1.00[EUR][1000 genomes]
rs1679453	1.00[EUR][1000 genomes]
rs4142671	1.00[EUR][1000 genomes]
rs55880712	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60543757	1.00[EUR][1000 genomes]
rs7087506	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097687	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098580	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590778	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590779	1.00[EUR][1000 genomes]
rs73590787	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590789	1.00[EUR][1000 genomes]
rs73592723	1.00[EUR][1000 genomes]
rs74114737	1.00[EUR][1000 genomes]
rs7903376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919733	1.00[EUR][1000 genomes]
rs7920841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
2	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
10	chr10:4321600-4327800	Enhancers	NHLF	lung
11	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:4322200-4326200	Weak transcription	Right Atrium	heart
13	chr10:4323000-4325800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:4323200-4326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:4323400-4326200	Weak transcription	Right Ventricle	heart
16	chr10:4323400-4326800	Weak transcription	Esophagus	oesophagus
17	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
18	chr10:4323400-4331000	Weak transcription	Lung	lung
19	chr10:4323800-4326800	Weak transcription	Aorta	Aorta
20	chr10:4323800-4326800	Weak transcription	Small Intestine	intestine
21	chr10:4324000-4326000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:4324000-4326000	Weak transcription	Osteobl	bone
23	chr10:4324000-4326200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:4324000-4326200	Weak transcription	HMEC	breast
25	chr10:4324200-4327200	Enhancers	Adipose Nuclei	Adipose
26	chr10:4324400-4326200	Weak transcription	Hela-S3	cervix
27	chr10:4324800-4327800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:4325000-4326000	Weak transcription	Psoas Muscle	Psoas
29	chr10:4325000-4327000	Enhancers	HSMMtube	muscle
30	chr10:4325000-4329800	Weak transcription	Left Ventricle	heart
31	chr10:4325200-4325800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:4325200-4326800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:4325200-4327000	Enhancers	Colon Smooth Muscle	Colon
34	chr10:4325400-4326200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:4325400-4326600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:4325600-4326000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:4325600-4326000	Weak transcription	Fetal Stomach	stomach
38	chr10:4325600-4326000	Weak transcription	Ovary	ovary
39	chr10:4325600-4326200	Enhancers	Fetal Heart	heart
40	chr10:4325600-4327000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr10:4325600-4327000	Enhancers	Fetal Kidney	kidney
42	chr10:4325600-4327000	Enhancers	Rectal Smooth Muscle	rectum
43	chr10:4325600-4327000	Enhancers	HSMM	muscle

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