Variant report

Variant	rs11815588
Chromosome Location	chr10:4234306-4234307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11252407	1.00[EUR][1000 genomes]
rs11252427	1.00[EUR][1000 genomes]
rs11252428	1.00[EUR][1000 genomes]
rs11819395	1.00[EUR][1000 genomes]
rs12246351	1.00[EUR][1000 genomes]
rs12250485	1.00[EUR][1000 genomes]
rs12266164	1.00[EUR][1000 genomes]
rs1923398	1.00[EUR][1000 genomes]
rs4142671	1.00[EUR][1000 genomes]
rs55880712	1.00[EUR][1000 genomes]
rs60543757	1.00[EUR][1000 genomes]
rs7087506	1.00[EUR][1000 genomes]
rs7097687	1.00[EUR][1000 genomes]
rs7098580	1.00[EUR][1000 genomes]
rs73590778	1.00[EUR][1000 genomes]
rs73590779	1.00[EUR][1000 genomes]
rs73590787	1.00[EUR][1000 genomes]
rs73590789	1.00[EUR][1000 genomes]
rs74114737	1.00[EUR][1000 genomes]
rs7903376	1.00[EUR][1000 genomes]
rs7913017	1.00[EUR][1000 genomes]
rs7919733	1.00[EUR][1000 genomes]
rs7920841	1.00[EUR][1000 genomes]
rs7924147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4232600-4235200	Enhancers	NHEK	skin
2	chr10:4232800-4234400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4232800-4235000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:4233200-4234600	Weak transcription	Esophagus	oesophagus
5	chr10:4233200-4237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:4233400-4234400	Enhancers	HMEC	breast
7	chr10:4233800-4234800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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